Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 3.2e-104 381.7 187 100.0
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 7.9e-87 323.9 181 85.1
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 7.9e-87 323.9 181 85.1
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 1.8e-86 322.8 189 84.1
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 5.1e-86 321.2 182 84.6
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 8.2e-84 313.9 184 82.1
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 4.1e-83 311.6 187 81.8
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.9e-80 302.8 181 80.7
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 2.5e-80 302.4 188 78.7
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 4.6e-79 298.1 187 80.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 8.8e-78 293.9 187 79.7
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 4.3e-77 291.6 188 78.2
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 1.7e-76 289.7 187 79.7
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 2.8e-76 288.9 185 75.1
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 1.4e-75 286.6 188 79.8
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.8e-75 286.2 191 78.0
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 6.9e-75 284.3 180 76.1
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.5e-74 283.1 184 75.0
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 5.9e-74 281.2 180 75.0
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 1.7e-73 279.6 187 75.4
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 1.7e-73 279.6 180 73.9
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 5.0e-73 278.1 182 72.5
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 8.5e-73 277.3 192 76.6
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 1.1e-72 276.9 192 74.5
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 1.4e-72 276.6 189 77.2
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 2.5e-72 275.8 187 75.4
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 2.5e-72 275.8 180 75.0
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 7.2e-72 274.2 192 73.4
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 2.1e-71 272.7 190 71.1
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.1e-71 272.7 192 73.4
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 2.1e-71 272.7 190 76.8
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.7e-71 272.3 192 72.9
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 6.1e-71 271.2 190 73.2
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 1.0e-70 270.4 178 75.8
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 3.0e-70 268.9 190 75.3
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 2.8e-68 262.3 188 72.9
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 4.8e-68 261.5 185 72.4
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 8.2e-68 260.8 155 81.3
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.1e-67 260.4 181 75.7
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.1e-67 260.4 181 75.7
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 1.8e-67 259.6 129 94.6
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 5.3e-67 258.1 181 75.1
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 1.5e-66 256.5 185 74.1
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.5e-66 255.4 181 69.6
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 7.7e-66 254.2 180 72.8
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 7.7e-66 254.2 183 70.5
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 1.3e-65 253.4 191 69.1
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 3.8e-65 251.9 181 70.2
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 3.8e-65 251.9 191 70.2
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 3.8e-65 251.9 186 73.7
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 5.0e-65 251.5 186 73.1
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 6.5e-65 251.1 183 69.9
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 8.5e-65 250.8 189 69.3
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 2.7e-63 245.7 184 69.0
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 6.7e-62 241.1 132 86.4
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 1.1e-61 240.4 188 65.4
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 1.5e-61 240.0 182 69.2
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 3.3e-61 238.8 188 64.9
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 4.4e-61 238.4 183 66.7
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 5.7e-61 238.0 185 69.2
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 7.5e-61 237.7 185 69.2
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 2.2e-60 236.1 189 63.5
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 2.8e-60 235.7 155 78.1
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 8.2e-60 234.2 185 63.8
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 8.2e-60 234.2 181 66.9
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.1e-59 233.8 188 66.5
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 5.3e-59 231.5 188 66.5
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 5.3e-59 231.5 182 64.3
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 7.0e-59 231.1 187 65.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 1.2e-58 230.3 194 62.9
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 1.6e-58 229.9 182 63.2
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 2.6e-58 229.2 191 63.9
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 4.5e-58 228.4 188 64.4
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 2.2e-57 226.1 168 66.1
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.9e-57 225.7 133 79.7
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 1.5e-56 223.4 195 60.5
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 1.4e-54 216.9 187 63.1
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 3.0e-54 215.7 183 63.9
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 5.2e-54 214.9 118 88.1
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 3.4e-53 212.2 191 60.2
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 9.8e-53 210.7 187 61.5
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 9.8e-53 210.7 187 61.5
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 1.7e-52 209.9 186 62.9
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 1.7e-52 209.9 187 61.5
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 1.7e-52 209.9 187 61.5
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 2.2e-52 209.5 187 62.0
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 2.8e-52 209.1 187 62.0
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 4.8e-52 208.4 159 66.0
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 1.1e-51 207.2 181 61.9
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 2.4e-51 206.1 159 66.0
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 2.4e-51 206.1 159 66.0
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 2.4e-51 206.1 187 60.4
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 3.1e-51 205.7 181 61.3
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 4.1e-51 205.3 187 60.4
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 2.7e-50 202.6 149 69.1
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 3.5e-50 202.2 161 65.2
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.9e-48 196.4 185 59.5
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 2.1e-47 193.0 183 60.7
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 4.0e-46 188.7 117 72.6
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 3.7e-44 182.2 145 63.4
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 2.0e-42 176.4 114 68.4
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 1.3e-41 173.7 147 61.2
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.1e-40 170.6 181 55.8
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 1.4e-35 153.7 124 64.5
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 1.3e-33 147.1 92 71.7
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 2.5e-32 142.9 149 52.3
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 3.7e-28 129.0 111 59.5
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 2.8e-23 112.8 187 43.9
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 7.5e-21 104.8 94 53.2
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 7.5e-21 104.8 106 47.2
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 3.7e-20 102.4 99 52.5
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 1.0e-17 94.4 99 52.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-10 70.1 52 76.9
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 7.3e-08 61.6 180 30.6


User provided reference genes

Program Settings