Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1426.8 729 100.0
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1257.7 729 90.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1254.2 742 88.9
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1252.7 742 88.8
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1242.3 729 89.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1241.9 728 90.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1167.5 737 83.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1147.1 744 80.8
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1140.2 742 80.2
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1133.6 734 79.6
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1131.3 733 79.8
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1131.3 742 79.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 749 79.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 733 80.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1130.2 739 79.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1130.2 734 80.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1129.8 737 79.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1129.4 734 80.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 744 79.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1128.2 744 78.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1122.8 742 79.2
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1122.1 729 79.1
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 735 79.2
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 734 80.2
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 735 79.3
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 733 79.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 738 78.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 734 79.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 733 78.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 743 78.5
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 738 79.4
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 744 78.6
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 729 78.2
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 731 78.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 733 78.4
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 732 77.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 745 79.9
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 740 77.3
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1108.2 735 78.2
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 731 78.1
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 721 79.3
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 761 76.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 730 77.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1097.8 725 77.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 741 76.7
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 730 78.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1094.3 748 78.7
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1089.3 734 77.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 733 77.1
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1084.7 730 77.3
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1082.8 734 77.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1082.0 722 77.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 730 76.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.5e-311 1071.2 709 80.3
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 3.8e-310 1067.8 731 76.9
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 2.4e-309 1065.1 717 77.0
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 3.2e-309 1064.7 741 76.7
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 3.2e-309 1064.7 741 76.7
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 9.3e-309 1063.1 722 76.3
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 3.9e-307 1057.7 738 72.9
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 738 73.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 6.2e-305 1050.4 734 74.4
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.0e-303 1045.4 740 75.3
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.2e-302 1042.0 738 72.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-301 1038.9 727 74.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-300 1034.6 733 75.7
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 4.6e-300 1034.2 737 72.0
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 8.2e-297 1023.5 730 73.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 3.1e-296 1021.5 730 72.9
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 4.0e-296 1021.1 730 72.7
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 5.3e-296 1020.8 737 73.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.5e-295 1019.2 731 72.4
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 730 72.7
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 730 72.7
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 731 74.4
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 5.8e-295 1017.3 731 72.5
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.2e-294 1015.4 730 72.6
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 1.4e-293 1012.7 730 71.9
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 5.5e-293 1010.7 727 72.8
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 7.9e-292 1006.9 728 71.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.1e-290 1003.0 684 76.8
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.9e-290 1002.3 731 71.0
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.9e-290 1002.3 646 79.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 9.7e-290 1000.0 727 71.7
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.6e-289 999.2 722 71.6
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 6.3e-289 997.3 727 71.4
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.1e-288 996.5 649 79.4
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-287 992.3 703 75.7
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 2.6e-287 991.9 727 71.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 2.6e-287 991.9 727 71.1
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 2.6e-287 991.9 727 71.1
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 3.2e-285 984.9 733 70.4
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.3e-283 978.8 746 72.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.7e-281 972.6 688 74.1
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.4e-280 969.5 719 70.5
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.4e-280 968.8 714 73.5
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.2e-277 958.0 684 72.7
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.1e-276 955.7 731 68.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.6e-276 954.9 721 69.1
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.8e-275 952.6 712 69.7
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.8e-273 944.5 733 67.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-270 935.6 733 67.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.3e-267 925.6 571 84.1
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 3.9e-267 924.9 610 78.7
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 5.2e-267 924.5 743 67.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.6e-266 922.2 539 87.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.5e-263 911.8 723 66.5
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.4e-261 903.7 677 69.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 9.1e-256 887.1 766 66.3
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.4e-248 863.2 714 67.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.3e-229 797.7 724 60.6
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.0e-228 794.3 569 72.2
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.6e-226 789.3 524 76.5
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-225 786.2 564 72.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.6e-220 768.8 477 83.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.9e-211 737.6 584 70.7
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 4.5e-194 682.2 707 53.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.2e-185 653.3 634 54.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.5e-184 648.7 645 57.8
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.3e-181 639.4 429 78.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.7e-181 638.6 410 81.2
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-162 577.8 519 62.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-161 573.9 426 74.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-158 563.5 667 46.3
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.2e-152 542.7 668 45.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.2e-151 541.2 668 44.5
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-128 463.8 665 40.3
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.9e-126 455.3 659 39.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-123 447.6 668 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.3e-120 436.8 653 40.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.1e-119 434.1 753 40.1
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.2e-117 428.3 308 70.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.3e-104 383.3 399 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.8e-101 372.9 422 49.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.4e-100 369.0 277 71.5
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 9.3e-75 285.8 222 63.5
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.5e-64 251.1 251 59.0
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-59 235.7 171 77.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.6e-48 198.0 157 66.9
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.5e-32 145.6 140 52.9
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-32 145.2 78 89.7
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 7.7e-29 133.3 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.1e-26 123.6 60 90.0
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 1.2e-24 119.4 59 89.8
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 5.0e-20 104.0 62 85.5
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 8.5e-20 103.2 67 82.1
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.9e-19 102.1 62 85.5
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.5e-19 101.7 67 80.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 3.2e-19 101.3 89 61.8
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.0e-16 92.0 56 76.8
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.4e-14 85.9 119 44.5
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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