Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 0.0e+00 1308.5 661 100.0
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.0e-238 827.8 672 67.0
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.0e-229 800.4 655 66.6
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.3e-205 720.3 658 62.6
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 5.3e-170 602.1 613 56.6
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 6.1e-166 588.6 623 53.6
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.6e-158 563.9 670 49.9
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 1.1e-154 551.2 561 54.4
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.9e-151 540.4 639 49.0
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 3.4e-148 529.6 669 49.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 4.8e-147 525.8 637 48.5
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.5e-145 519.6 652 47.2
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.0e-140 503.8 616 46.4
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.1e-138 498.0 666 44.3
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 5.9e-137 492.3 622 47.3
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 2.5e-135 486.9 571 47.3
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.5e-135 486.9 615 45.9
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 6.1e-134 482.3 642 45.5
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 2.3e-133 480.3 615 46.0
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.0e-133 479.9 571 46.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 4.0e-133 479.6 608 47.4
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.0e-132 477.2 615 45.9
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 9.8e-132 474.9 645 44.2
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.9e-131 472.6 615 45.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.1e-130 471.5 628 47.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 3.5e-129 466.5 567 46.7
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 7.8e-129 465.3 618 47.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.1e-127 461.5 607 47.4
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.5e-127 460.3 626 46.5
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 4.3e-127 459.5 665 44.4
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 5.6e-127 459.1 580 46.7
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.1e-126 457.2 606 46.0
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 6.2e-126 455.7 627 45.9
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 8.0e-126 455.3 651 43.3
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 5.2e-125 452.6 673 43.1
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.6e-124 450.3 616 43.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 9.8e-124 448.4 671 41.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 6.4e-123 445.7 709 41.3
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 1.1e-122 444.9 668 42.2
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 3.2e-122 443.4 614 43.0
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-119 434.9 572 44.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 3.3e-119 433.3 621 43.8
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 5.6e-119 432.6 569 43.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.6e-119 432.6 572 44.4
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.1e-118 430.6 568 45.2
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 2.8e-118 430.3 689 42.1
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-117 428.3 574 44.4
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.2e-113 414.8 657 41.2
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.0e-112 411.8 602 42.2
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.7e-112 411.0 572 43.9
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.1e-110 404.1 634 42.4
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 4.7e-110 402.9 640 41.1
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.8e-109 401.0 681 39.2
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.4e-106 391.3 613 39.3
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.5e-105 386.7 541 43.6
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.0e-104 383.6 606 40.1
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 3.0e-104 383.6 579 41.6
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 8.6e-104 382.1 566 42.4
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.9e-103 380.9 619 40.1
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.3e-103 379.8 600 41.3
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 7.3e-103 379.0 627 39.2
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.2e-102 378.3 667 39.9
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.1e-102 377.5 682 39.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 2.6e-100 370.5 620 38.9
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 4.4e-100 369.8 640 37.3
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 4.9e-99 366.3 573 42.2
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.4e-98 364.8 594 40.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.9e-98 364.4 505 42.0
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.9e-98 364.4 621 39.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.9e-98 364.4 652 38.2
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 3.2e-98 363.6 556 41.4
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.2e-98 363.6 658 37.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 5.4e-98 362.8 614 38.8
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 2.7e-97 360.5 617 38.9
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.3e-96 358.2 639 37.6
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.5e-95 354.8 756 35.2
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.6e-94 351.3 557 41.1
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.8e-94 350.5 486 41.2
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.8e-93 347.8 614 38.1
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 5.3e-93 346.3 624 37.8
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 4.3e-87 326.6 689 35.4
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.4e-85 321.6 635 36.5
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.2e-81 308.5 398 43.5
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 8.7e-80 302.4 669 34.2
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 4.3e-79 300.1 398 42.5
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.0e-75 288.9 527 35.9
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 3.0e-72 277.3 715 31.2
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 8.7e-72 275.8 540 36.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 2.5e-71 274.2 530 35.8
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 3.7e-70 270.4 529 35.9
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 6.3e-70 269.6 528 35.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 9.0e-69 265.8 695 31.1
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.5e-68 265.0 609 32.7
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.0e-68 264.6 550 35.1
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.0e-67 262.3 651 31.3
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 2.5e-66 257.7 539 34.7
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 6.7e-64 249.6 310 50.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.5e-63 248.4 377 38.7
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.5e-63 247.7 310 50.0
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 8.5e-59 232.6 416 39.7
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.5e-55 221.9 366 37.4
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.0e-55 221.5 182 56.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 8.2e-46 189.5 355 33.0
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.4e-45 188.7 224 48.2
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.9e-42 178.3 552 28.4
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 1.0e-40 172.6 377 36.6
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.0e-40 172.6 176 47.7
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.5e-39 166.4 120 69.2
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-34 152.5 300 35.0
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.2e-34 151.0 376 29.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 9.4e-34 149.4 377 28.9
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.1e-29 134.4 343 27.1
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.1e-29 134.4 267 35.6
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 3.5e-28 131.0 226 31.9
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.0e-23 115.2 90 57.8
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.3e-14 85.9 187 29.9
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.5e-10 71.6 99 42.4
MBI15_g34437_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D007642 8.3e-06 56.6 100 40.0


User provided reference genes

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