Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 1.0e-145 520.0 256 100.0
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 1.1e-115 420.2 252 81.7
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 3.7e-111 405.2 231 84.0
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.1e-110 403.7 248 80.2
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 3.8e-108 395.2 229 83.4
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 6.5e-108 394.4 234 81.2
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.1e-107 393.7 233 81.5
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.5e-107 393.3 229 83.0
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 2.5e-107 392.5 234 80.8
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 2.5e-107 392.5 236 79.7
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 5.5e-107 391.3 246 76.8
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 8.0e-106 387.5 246 77.2
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.0e-105 387.1 241 79.7
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.4e-105 386.7 231 77.1
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.4e-105 386.7 224 81.2
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.3e-105 386.0 241 77.2
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 6.7e-105 384.4 224 80.4
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 2.0e-104 382.9 259 72.6
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 2.0e-104 382.9 249 75.5
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 2.6e-104 382.5 249 75.1
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 4.4e-104 381.7 248 73.8
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 7.5e-104 380.9 243 76.1
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 7.5e-104 380.9 241 73.4
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 9.7e-104 380.6 241 75.5
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 9.7e-104 380.6 252 75.8
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 2.8e-103 379.0 249 75.1
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 2.8e-103 379.0 235 77.4
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 8.2e-103 377.5 249 74.3
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 2.4e-102 375.9 249 75.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 4.1e-102 375.2 230 76.1
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.3e-102 374.8 230 76.1
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 1.6e-101 373.2 262 70.6
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 7.7e-101 370.9 249 72.7
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 7.7e-101 370.9 236 75.8
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 1.0e-100 370.5 257 72.0
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 2.2e-100 369.4 256 69.9
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 5.0e-100 368.2 337 58.8
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 6.5e-100 367.9 248 72.2
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 6.5e-100 367.9 226 75.7
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 6.5e-100 367.9 250 71.2
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 8.5e-100 367.5 217 77.4
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 1.9e-99 366.3 217 78.3
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 5.5e-99 364.8 231 75.8
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 7.2e-99 364.4 244 70.1
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 1.6e-98 363.2 217 76.0
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 1.6e-98 363.2 241 73.9
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 1.6e-98 363.2 237 73.8
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 1.0e-97 360.5 253 70.8
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 1.8e-97 359.8 228 75.4
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 2.3e-97 359.4 222 75.7
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.3e-97 359.4 203 80.8
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.3e-97 359.4 253 70.4
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 4.0e-97 358.6 214 77.6
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 4.0e-97 358.6 222 74.8
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 5.2e-97 358.2 224 72.8
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 5.2e-97 358.2 215 76.7
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 6.8e-97 357.8 239 70.7
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.2e-96 357.1 232 73.3
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.5e-96 356.7 252 69.4
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.0e-96 356.3 242 71.9
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 2.6e-96 355.9 250 68.0
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 4.4e-96 355.1 251 68.5
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 9.8e-96 354.0 236 70.3
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 2.8e-95 352.4 245 71.4
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 4.8e-95 351.7 238 69.7
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.1e-94 350.5 228 73.2
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 1.4e-94 350.1 252 66.3
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 1.8e-94 349.7 240 67.5
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 4.1e-94 348.6 252 65.9
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 5.4e-94 348.2 217 73.3
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.2e-93 347.1 221 71.5
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 1.6e-93 346.7 217 72.8
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 5.9e-93 344.7 251 65.7
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 7.7e-93 344.4 240 67.1
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 7.7e-93 344.4 252 65.9
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 7.7e-93 344.4 236 69.9
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 1.3e-92 343.6 219 71.7
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.3e-92 343.6 252 64.7
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.7e-92 343.2 257 64.2
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.7e-92 343.2 238 66.8
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 1.7e-92 343.2 252 65.5
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 2.3e-92 342.8 217 71.4
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 2.9e-92 342.4 219 71.7
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.8e-92 342.0 257 64.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 5.0e-92 341.7 258 64.3
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 5.0e-92 341.7 284 62.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.1e-91 340.5 241 66.0
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 1.5e-91 340.1 222 71.2
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 1.5e-91 340.1 240 65.4
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 3.3e-91 339.0 204 77.0
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 7.2e-91 337.8 240 66.7
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 7.2e-91 337.8 260 63.5
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 6.1e-90 334.7 222 73.4
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.2e-88 330.5 264 62.9
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 5.7e-88 328.2 243 64.6
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 7.8e-85 317.8 228 67.1
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 8.6e-84 314.3 228 63.2
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.2e-79 299.7 230 64.8
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.7e-79 298.9 198 74.2
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 3.2e-78 295.8 205 68.3
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 9.2e-78 294.3 164 82.9
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 6.6e-76 288.1 197 73.1
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.7e-71 273.5 236 59.3
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.0e-68 264.2 215 59.1
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 3.0e-68 262.7 236 57.6
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 1.4e-62 243.8 233 51.5
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.6e-58 230.3 141 76.6
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 2.4e-54 216.5 180 61.1
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.0e-48 196.8 101 89.1
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 1.1e-43 181.0 213 46.0
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 1.4e-41 174.1 130 63.1
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.4e-40 169.5 210 44.8
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 5.4e-38 162.2 198 48.5
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 7.1e-38 161.8 114 73.7
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 1.5e-35 154.1 110 66.4
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.1e-33 147.9 213 39.4
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 6.9e-33 145.2 94 77.7
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 6.9e-33 145.2 94 77.7
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 3.2e-30 136.3 108 63.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 3.2e-30 136.3 107 62.6
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.5e-27 127.5 107 64.5
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 2.5e-27 126.7 134 53.0
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 2.5e-27 126.7 134 53.0
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 6.2e-26 122.1 94 69.1
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.4e-25 120.9 114 57.9
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.3e-23 114.4 62 82.3
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.7e-23 114.0 82 70.7
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 7.9e-21 105.1 188 38.3
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 4.1e-17 92.8 171 35.1
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.2e-16 91.3 55 74.5
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 4.5e-16 89.4 48 83.3
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 8.5e-15 85.1 180 33.9
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 2.8e-10 70.1 74 52.7


User provided reference genes

Program Settings