Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040576 Camellia sinensis var. sinensis HOM05D008135 ORTHO05D010260 1.2e-40 169.5 90 100.0
Actinidia32128 Actinidia chinensis HOM05D008135 ORTHO05D010260 4.3e-22 107.8 75 80.0
Solyc03g121340.1 Solanum lycopersicum HOM05D008135 ORTHO05D010260 5.6e-22 107.5 82 69.5
Sopen03g040150 Solanum pennellii HOM05D008135 ORTHO05D010260 3.6e-21 104.8 62 82.3
Peaxi162Scf00038g01219 Petunia axillaris HOM05D008135 ORTHO05D010260 8.1e-21 103.6 62 82.3
Nitab4.5_0006071g0080 Nicotiana tabacum HOM05D008135 ORTHO05D010260 1.1e-20 103.2 60 83.3
vmacro18825 Vaccinium macrocarpon HOM05D008135 ORTHO05D010260 1.4e-20 102.8 89 64.0
Rhsim08G0230800 Rhododendron simsii HOM05D008135 ORTHO05D010260 4.0e-20 101.3 65 76.9
Oeu052813.1 Olea europaea HOM05D008135 ORTHO05D010260 7.6e-19 97.1 58 79.3
Dinv30405 Davidia involucrata HOM05D008135 ORTHO05D010260 4.2e-17 91.3 51 84.3
Manes.04G137100 Manihot esculenta HOM05D008135 ORTHO05D010260 4.2e-17 91.3 94 58.5
MSTRG.11003 Avicennia marina HOM05D008135 ORTHO05D010260 1.2e-16 89.7 66 63.6
RcHm_v2.0_Chr2g0142321 Rosa chinensis HOM05D008135 ORTHO05D010260 4.6e-16 87.8 79 60.8
Actinidia21739 Actinidia chinensis HOM05D008135 ORTHO05D010260 6.0e-16 87.4 71 70.4
Manes.11G029100 Manihot esculenta HOM05D008135 ORTHO05D010260 6.0e-16 87.4 83 61.4
unitig_88.g27599 Utricularia gibba HOM05D008135 ORTHO05D010260 6.0e-16 87.4 77 59.7
Thecc.06G106900 Theobroma cacao HOM05D008135 ORTHO05D010260 7.8e-16 87.0 80 62.5
DCAR_026371 Daucus carota HOM05D008135 ORTHO05D010260 2.3e-15 85.5 58 69.0
CiPaw.01G227600 Carya illinoinensis HOM05D008135 ORTHO05D010260 3.0e-15 85.1 81 64.2
Duzib235G1506 Durio zibethinus HOM05D008135 ORTHO05D010260 3.9e-15 84.7 86 59.3
ECA232G1244 Erigeron canadensis HOM05D008135 ORTHO05D010260 5.1e-15 84.3 63 69.8
Potri.001G194100 Populus trichocarpa HOM05D008135 ORTHO05D010260 5.1e-15 84.3 82 58.5
Cfa003610 Carpinus fangiana HOM05D008135 ORTHO05D010260 6.6e-15 84.0 77 61.0
Migut.I00998 Erythranthe guttata HOM05D008135 ORTHO05D010260 8.7e-15 83.6 55 72.7
Nitab4.5_0004848g0120 Nicotiana tabacum HOM05D008135 ORTHO05D010260 1.1e-14 83.2 52 75.0
Gohir.A05G133400 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.5e-14 82.8 90 52.2
Gohir.D05G135300 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.9e-14 82.4 90 52.2
Gorai.009G139100 Gossypium raimondii HOM05D008135 ORTHO05D010260 3.3e-14 81.6 90 52.2
DCAR_007606 Daucus carota HOM05D008135 ORTHO05D010260 7.3e-14 80.5 60 70.0
Sabra01G0135100 Salix brachista HOM05D008135 ORTHO05D010260 7.3e-14 80.5 72 63.9
Glyma.07G012900 Glycine max HOM05D008135 ORTHO05D010260 1.2e-13 79.7 80 55.0
Cpa.g.sc131.24 Carica papaya HOM05D008135 ORTHO05D010260 2.8e-13 78.6 82 54.9
Prupe.3G053100 Prunus persica HOM05D008135 ORTHO05D010260 2.8e-13 78.6 74 59.5
FAN05G3342 Fragaria x ananassa HOM05D008135 ORTHO05D010260 3.6e-13 78.2 77 58.4
Glyma.08G196600 Glycine max HOM05D008135 ORTHO05D010260 8.1e-13 77.0 81 53.1
FvH4_6g32890 Fragaria vesca HOM05D008135 ORTHO05D010260 1.1e-12 76.6 79 57.0
COL.COLO4_30598 Corchorus olitorius HOM05D008135 ORTHO05D010260 1.8e-12 75.9 93 51.6
FAN02G1144 Fragaria x ananassa HOM05D008135 ORTHO05D010260 1.8e-12 75.9 79 55.7
Phvul.010G142400 Phaseolus vulgaris HOM05D008135 ORTHO05D010260 3.1e-12 75.1 81 51.9
QL05p015599 Quercus lobata HOM05D008135 ORTHO05D010260 4.0e-12 74.7 68 60.3
QL05p015762 Quercus lobata HOM05D008135 ORTHO05D010260 4.0e-12 74.7 68 60.3
Eucgr.J02889 Eucalyptus grandis HOM05D008135 ORTHO05D010260 5.3e-12 74.3 66 62.1
QL05p015735 Quercus lobata HOM05D008135 ORTHO05D010260 1.2e-11 73.2 68 58.8
Atru.chr1.3625 Acer truncatum HOM05D008135 ORTHO05D010260 3.4e-11 71.6 97 47.4
arahy.Tifrunner.gnm1.ann1.4P5WGY Arachis hypogaea HOM05D008135 ORTHO05D010260 3.4e-11 71.6 82 53.7
Gohir.D10G064050 Gossypium hirsutum HOM05D008135 ORTHO05D010260 3.4e-11 71.6 94 51.1
arahy.Tifrunner.gnm1.ann1.7STU2J Arachis hypogaea HOM05D008135 ORTHO05D010260 9.9e-11 70.1 82 53.7
Gohir.A10G062350 Gossypium hirsutum HOM05D008135 ORTHO05D010260 9.9e-11 70.1 96 50.0
Gorai.011G068000 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.3e-10 69.7 94 50.0
TAR624G1313 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.7e-10 69.3 83 50.6
Lalb_Chr25g0280561 Lupinus albus HOM05D008135 ORTHO05D010260 2.2e-10 68.9 70 54.3
Medtr8g015560 Medicago truncatula HOM05D008135 ORTHO05D010260 2.2e-10 68.9 80 53.8
TAR383G0415 Trochodendron aralioides HOM05D008135 ORTHO05D010260 2.2e-10 68.9 76 52.6
CsaV3_7G034940 Cucumis sativus L. HOM05D008135 ORTHO05D010260 3.8e-10 68.2 84 52.4
MELO3C024405.2 Cucumis melo HOM05D008135 ORTHO05D010260 6.4e-10 67.4 84 51.2
Lj3g0018742 Lotus japonicus HOM05D008135 ORTHO05D010260 2.4e-09 65.5 80 50.0
MBI01_g16574_MAGBIO Magnolia biondii HOM05D008135 ORTHO05D010260 3.2e-09 65.1 62 54.8
Psat4g194640 Pisum sativum HOM05D008135 ORTHO05D010260 4.2e-09 64.7 86 48.8
ClCG09G000520 Citrullus lanatus HOM05D008135 ORTHO05D010260 1.6e-08 62.8 84 48.8
Sed0004354 Sechium edule HOM05D008135 ORTHO05D010260 2.7e-08 62.0 76 50.0
Os01g0558700 Oryza sativa ssp. japonica HOM05D008135 ORTHO05D010260 8.7e-07 57.0 83 44.6
Aqoxy2G03851 Aquilegia oxysepala HOM05D008135 ORTHO05D010260 3.3e-06 55.1 56 53.6
Sc12g0009960 Simmondsia chinensis HOM05D008135 ORTHO05D010260 3.3e-06 55.1 48 56.2
THA.LOC109116552 Tarenaya hassleriana HOM05D008135 ORTHO05D010260 3.3e-06 55.1 71 45.1


User provided reference genes

Program Settings