Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040574 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.3e-191 672.9 342 100.0
CSS0025219 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 4.8e-122 441.8 330 73.3
CSS0022969 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 4.9e-111 405.2 365 64.9
CSS0009887 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.8e-108 396.7 367 62.7
CSS0050190 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 3.3e-107 392.5 352 65.6
CSS0012684 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 2.1e-106 389.8 359 63.2
CSS0003151 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 3.7e-106 389.0 353 64.6
CSS0035588 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.0e-84 317.8 321 59.8
Actinidia17461 Actinidia chinensis HOM05D000240 ORTHO05D001140 8.0e-69 265.0 339 50.7
vmacro21909 Vaccinium macrocarpon HOM05D000240 ORTHO05D001140 5.9e-64 248.8 340 45.0
Rhsim10G0214100 Rhododendron simsii HOM05D000240 ORTHO05D001140 5.9e-56 222.2 340 44.1
Dinv33608 Davidia involucrata HOM05D000240 ORTHO05D001140 2.9e-55 219.9 335 44.5
CSS0044111 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.5e-54 217.6 314 46.8
Dinv40065 Davidia involucrata HOM05D000240 ORTHO05D001140 4.0e-36 156.4 324 37.7
TAR625G0658 Trochodendron aralioides HOM05D000240 ORTHO05D001140 4.1e-33 146.4 367 32.4
TAR145G0003 Trochodendron aralioides HOM05D000240 ORTHO05D001140 1.3e-31 141.4 315 34.0
Cfa006951 Carpinus fangiana HOM05D000240 ORTHO05D001140 1.1e-30 138.3 334 35.3
Haze_03801 Corylus avellana HOM05D000240 ORTHO05D001140 1.9e-30 137.5 334 35.0
GSVIVG01018815001 Vitis vinifera HOM05D000240 ORTHO05D001140 7.3e-30 135.6 363 34.7
CiPaw.07G056700 Carya illinoinensis HOM05D000240 ORTHO05D001140 8.1e-29 132.1 320 34.7
CiPaw.08G133700 Carya illinoinensis HOM05D000240 ORTHO05D001140 1.8e-28 131.0 333 33.6
Nn6g32254 Nelumbo nucifera HOM05D000240 ORTHO05D001140 4.4e-27 126.3 358 31.8
Lj4A216T56 Lonicera japonica HOM05D000240 ORTHO05D001140 1.7e-26 124.4 321 34.3
Atru.chr3.774 Acer truncatum HOM05D000240 ORTHO05D001140 2.7e-24 117.1 304 34.5
Dinv42000 Davidia involucrata HOM05D000240 ORTHO05D001140 6.0e-24 115.9 352 31.2
Oeu052723.1 Olea europaea HOM05D000240 ORTHO05D001140 1.3e-23 114.8 382 29.6
Oeu021935.1 Olea europaea HOM05D000240 ORTHO05D001140 1.7e-23 114.4 383 29.5
TWI53G1266 Tripterygium wilfordii HOM05D000240 ORTHO05D001140 1.7e-23 114.4 319 33.2
MD15G1248100 Malus domestica HOM05D000240 ORTHO05D001140 2.3e-23 114.0 307 35.2
Nn5g29234 Nelumbo nucifera HOM05D000240 ORTHO05D001140 3.0e-23 113.6 350 30.0
Manes.01G143900 Manihot esculenta HOM05D000240 ORTHO05D001140 3.9e-23 113.2 297 34.3
TAR376G0597 Trochodendron aralioides HOM05D000240 ORTHO05D001140 8.6e-23 112.1 313 31.6
QL06p033858 Quercus lobata HOM05D000240 ORTHO05D001140 1.1e-22 111.7 309 34.0
Dinv23454 Davidia involucrata HOM05D000240 ORTHO05D001140 1.9e-22 110.9 321 31.2
Prupe.7G166000 Prunus persica HOM05D000240 ORTHO05D001140 2.8e-21 107.1 308 32.5
Glyma.16G130500 Glycine max HOM05D000240 ORTHO05D001140 3.6e-21 106.7 293 32.4
Potri.007G014800 Populus trichocarpa HOM05D000240 ORTHO05D001140 1.1e-20 105.1 303 34.0
Potri.005G116900 Populus trichocarpa HOM05D000240 ORTHO05D001140 1.4e-20 104.8 300 35.0
MD00G1176100 Malus domestica HOM05D000240 ORTHO05D001140 1.5e-19 101.3 277 32.9
MD02G1110400 Malus domestica HOM05D000240 ORTHO05D001140 2.6e-19 100.5 276 33.3
GSVIVG01024172001 Vitis vinifera HOM05D000240 ORTHO05D001140 2.6e-19 100.5 291 34.7
Sabra07G0012000 Salix brachista HOM05D000240 ORTHO05D001140 3.4e-19 100.1 302 33.1
TWI09G1077 Tripterygium wilfordii HOM05D000240 ORTHO05D001140 9.9e-19 98.6 321 31.5
MD02G1135300 Malus domestica HOM05D000240 ORTHO05D001140 2.9e-18 97.1 276 33.0
TAR628G0511 Trochodendron aralioides HOM05D000240 ORTHO05D001140 3.8e-18 96.7 176 39.8
QL11p046403 Quercus lobata HOM05D000240 ORTHO05D001140 1.4e-17 94.7 301 31.2
ATR0149G021 Amborella trichopoda HOM05D000240 ORTHO05D001140 4.2e-17 93.2 216 31.9
Haze_02249 Corylus avellana HOM05D000240 ORTHO05D001140 3.5e-16 90.1 282 30.1
Sabra05G0095700 Salix brachista HOM05D000240 ORTHO05D001140 3.5e-16 90.1 300 33.0
Haze_02246 Corylus avellana HOM05D000240 ORTHO05D001140 4.6e-16 89.7 282 30.1
FvH4_1g12070 Fragaria vesca HOM05D000240 ORTHO05D001140 7.8e-16 89.0 327 32.4
Lj2C465G2 Lonicera japonica HOM05D000240 ORTHO05D001140 7.8e-16 89.0 392 27.3
PSO541G3624 Papaver somniferum HOM05D000240 ORTHO05D001140 3.0e-15 87.0 279 30.5
Peaxi162Scf00799g00113 Petunia axillaris HOM05D000240 ORTHO05D001140 3.0e-15 87.0 396 27.0
FAN26G0612 Fragaria x ananassa HOM05D000240 ORTHO05D001140 3.9e-15 86.7 330 32.7
Eucgr.J02401 Eucalyptus grandis HOM05D000240 ORTHO05D001140 5.1e-15 86.3 342 28.1
Thecc.01G022100 Theobroma cacao HOM05D000240 ORTHO05D001140 5.1e-15 86.3 286 33.2
Cc07_g10490 Coffea canephora HOM05D000240 ORTHO05D001140 6.6e-15 85.9 366 27.3
CAN.G693.6 Capsicum annuum HOM05D000240 ORTHO05D001140 1.1e-14 85.1 398 24.9
Glyma.02G050400 Glycine max HOM05D000240 ORTHO05D001140 1.1e-14 85.1 317 29.3
Nitab4.5_0011770g0020 Nicotiana tabacum HOM05D000240 ORTHO05D001140 1.1e-14 85.1 407 26.5
RcHm_v2.0_Chr2g0099691 Rosa chinensis HOM05D000240 ORTHO05D001140 1.1e-14 85.1 275 33.1
Lj2A472T32 Lonicera japonica HOM05D000240 ORTHO05D001140 1.5e-14 84.7 392 27.3
CAN.G1505.18 Capsicum annuum HOM05D000240 ORTHO05D001140 1.9e-14 84.3 410 26.3
Actinidia02245 Actinidia chinensis HOM05D000240 ORTHO05D001140 2.5e-14 84.0 326 28.5
CANSAT01G1619 Cannabis sativa HOM05D000240 ORTHO05D001140 2.5e-14 84.0 276 32.6
COL.COLO4_21954 Corchorus olitorius HOM05D000240 ORTHO05D001140 3.3e-14 83.6 291 32.0
PSO675G2387 Papaver somniferum HOM05D000240 ORTHO05D001140 4.3e-14 83.2 279 29.7
Sed0004522 Sechium edule HOM05D000240 ORTHO05D001140 4.3e-14 83.2 239 34.7
FAN28G2600 Fragaria x ananassa HOM05D000240 ORTHO05D001140 5.6e-14 82.8 288 32.3
Glyma.11G075100 Glycine max HOM05D000240 ORTHO05D001140 5.6e-14 82.8 353 29.7
PSO210G5696 Papaver somniferum HOM05D000240 ORTHO05D001140 5.6e-14 82.8 314 26.8
FAN19G0101 Fragaria x ananassa HOM05D000240 ORTHO05D001140 7.3e-14 82.4 327 31.8
FAN23G1694 Fragaria x ananassa HOM05D000240 ORTHO05D001140 9.6e-14 82.0 330 32.1
Lj4g0008815 Lotus japonicus HOM05D000240 ORTHO05D001140 1.2e-13 81.6 338 28.7
Gorai.008G063800 Gossypium raimondii HOM05D000240 ORTHO05D001140 2.8e-13 80.5 184 39.1
Nitab4.5_0002880g0100 Nicotiana tabacum HOM05D000240 ORTHO05D001140 2.8e-13 80.5 412 26.5
VMungo1215G2142 Vigna mungo HOM05D000240 ORTHO05D001140 2.8e-13 80.5 331 29.3
Psat2g155680 Pisum sativum HOM05D000240 ORTHO05D001140 3.6e-13 80.1 286 28.3
Ciclev10027758m.g Citrus clementina HOM05D000240 ORTHO05D001140 4.7e-13 79.7 362 27.6
Nitab4.5_0000136g0040 Nicotiana tabacum HOM05D000240 ORTHO05D001140 4.7e-13 79.7 385 26.0
PGR102G0678 Punica granatum HOM05D000240 ORTHO05D001140 4.7e-13 79.7 293 31.1
MELO3C016369.2 Cucumis melo HOM05D000240 ORTHO05D001140 1.4e-12 78.2 319 29.8
MBI05_g14982_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001140 1.4e-12 78.2 307 27.4
PSO170G5584 Papaver somniferum HOM05D000240 ORTHO05D001140 1.4e-12 78.2 314 26.4
DCAR_017343 Daucus carota HOM05D000240 ORTHO05D001140 1.8e-12 77.8 387 25.8
PGSC0003DMG400003550 Solanum tuberosum HOM05D000240 ORTHO05D001140 2.4e-12 77.4 339 28.0
Cpa.g.sc6.222 Carica papaya HOM05D000240 ORTHO05D001140 3.1e-12 77.0 315 27.6
ECA238G2881 Erigeron canadensis HOM05D000240 ORTHO05D001140 3.1e-12 77.0 298 27.5
Potri.009G124500 Populus trichocarpa HOM05D000240 ORTHO05D001140 3.1e-12 77.0 348 26.4
SGA_v2.0_scaffold2G01251 Striga asiatica HOM05D000240 ORTHO05D001140 3.1e-12 77.0 344 28.5
Cpa.g.sc150.18 Carica papaya HOM05D000240 ORTHO05D001140 4.0e-12 76.6 283 27.6
Duzib264G0485 Durio zibethinus HOM05D000240 ORTHO05D001140 4.0e-12 76.6 283 31.8
Actinidia22998 Actinidia chinensis HOM05D000240 ORTHO05D001140 5.3e-12 76.3 104 43.3
Phvul.002G111200 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 6.9e-12 75.9 330 29.1
Sopen02g029100 Solanum pennellii HOM05D000240 ORTHO05D001140 6.9e-12 75.9 337 28.5
TPR.G2343 Trifolium pratense HOM05D000240 ORTHO05D001140 6.9e-12 75.9 366 27.6
Hma1.2p1_0773F.1_g216170 Hydrangea macrophylla HOM05D000240 ORTHO05D001140 9.0e-12 75.5 329 27.4
Medtr5g021650 Medicago truncatula HOM05D000240 ORTHO05D001140 9.0e-12 75.5 243 30.5
Solyc02g084390.3 Solanum lycopersicum HOM05D000240 ORTHO05D001140 9.0e-12 75.5 388 28.1
Aqoxy6G02365 Aquilegia oxysepala HOM05D000240 ORTHO05D001140 1.2e-11 75.1 211 30.3
Glyma.01G168200 Glycine max HOM05D000240 ORTHO05D001140 1.2e-11 75.1 337 28.5
Gohir.D11G185200 Gossypium hirsutum HOM05D000240 ORTHO05D001140 1.2e-11 75.1 296 28.7
CSS0040742 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.5e-11 74.7 220 31.8
Ca_24902_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 1.5e-11 74.7 310 28.1
TWI31G0813 Tripterygium wilfordii HOM05D000240 ORTHO05D001140 2.0e-11 74.3 344 24.4
CSS0001373 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 4.4e-11 73.2 212 33.0
Ca_22365_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 4.4e-11 73.2 313 31.6
TAR628G1350 Trochodendron aralioides HOM05D000240 ORTHO05D001140 4.4e-11 73.2 157 34.4
Phvul.003G260200 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 5.8e-11 72.8 319 30.7
Hma1.2p1_0032F.1_g020130 Hydrangea macrophylla HOM05D000240 ORTHO05D001140 7.6e-11 72.4 349 27.2
Atru.chr5.3142 Acer truncatum HOM05D000240 ORTHO05D001140 9.9e-11 72.0 345 27.2
Gorai.002G148900 Gossypium raimondii HOM05D000240 ORTHO05D001140 9.9e-11 72.0 317 25.6
Thecc.02G075200 Theobroma cacao HOM05D000240 ORTHO05D001140 9.9e-11 72.0 363 27.5
Gorai.007G196800 Gossypium raimondii HOM05D000240 ORTHO05D001140 1.7e-10 71.2 296 28.0
Dinv39490 Davidia involucrata HOM05D000240 ORTHO05D001140 2.2e-10 70.9 184 31.5
Manes.02G101900 Manihot esculenta HOM05D000240 ORTHO05D001140 2.2e-10 70.9 179 32.4
CsaV3_4G005820 Cucumis sativus L. HOM05D000240 ORTHO05D001140 3.8e-10 70.1 318 27.7
Duzib248G1170 Durio zibethinus HOM05D000240 ORTHO05D001140 3.8e-10 70.1 316 26.6
Gohir.A12G060650 Gossypium hirsutum HOM05D000240 ORTHO05D001140 3.8e-10 70.1 284 30.6
Lalb_Chr05g0212451 Lupinus albus HOM05D000240 ORTHO05D001140 3.8e-10 70.1 278 29.5
Gohir.D13G096900 Gossypium hirsutum HOM05D000240 ORTHO05D001140 4.9e-10 69.7 298 26.5
VMungo1127G0831 Vigna mungo HOM05D000240 ORTHO05D001140 6.4e-10 69.3 318 27.0
Gohir.A11G177400 Gossypium hirsutum HOM05D000240 ORTHO05D001140 8.4e-10 68.9 277 29.2
Gohir.A13G090700 Gossypium hirsutum HOM05D000240 ORTHO05D001140 8.4e-10 68.9 301 28.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 8.4e-10 68.9 325 28.3
Nitab4.5_0006358g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001140 8.4e-10 68.9 241 29.5
CiPaw.06G128100 Carya illinoinensis HOM05D000240 ORTHO05D001140 1.1e-09 68.6 185 33.5
Peaxi162Scf00016g00049 Petunia axillaris HOM05D000240 ORTHO05D001140 1.1e-09 68.6 314 30.9
Sed0007011 Sechium edule HOM05D000240 ORTHO05D001140 1.1e-09 68.6 302 26.2
Medtr4g071900 Medicago truncatula HOM05D000240 ORTHO05D001140 1.4e-09 68.2 312 26.3
Solyc02g062330.3 Solanum lycopersicum HOM05D000240 ORTHO05D001140 1.4e-09 68.2 337 26.4
Ah.01g018820 Amaranthus hybridus HOM05D000240 ORTHO05D001140 2.4e-09 67.4 192 30.7
Lj2g0001012 Lotus japonicus HOM05D000240 ORTHO05D001140 3.2e-09 67.0 301 27.2
CANSAT11G0520 Cannabis sativa HOM05D000240 ORTHO05D001140 4.2e-09 66.6 322 27.3
Sc08g0000890 Simmondsia chinensis HOM05D000240 ORTHO05D001140 4.2e-09 66.6 207 29.5
Nitab4.5_0005266g0120 Nicotiana tabacum HOM05D000240 ORTHO05D001140 5.4e-09 66.2 334 29.9
Ca_20934_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 7.1e-09 65.9 194 30.4
Duzib187G1330 Durio zibethinus HOM05D000240 ORTHO05D001140 7.1e-09 65.9 184 36.4
VMungo0251G3354 Vigna mungo HOM05D000240 ORTHO05D001140 9.3e-09 65.5 335 28.7
Prupe.8G084900 Prunus persica HOM05D000240 ORTHO05D001140 2.1e-08 64.3 214 31.8
Cc02_g16920 Coffea canephora HOM05D000240 ORTHO05D001140 2.7e-08 63.9 263 28.9
FAN24G2539 Fragaria x ananassa HOM05D000240 ORTHO05D001140 2.7e-08 63.9 280 29.3
SalBow8G1168 Salvia bowleyana HOM05D000240 ORTHO05D001140 2.7e-08 63.9 343 26.5
Sopen02g013320 Solanum pennellii HOM05D000240 ORTHO05D001140 2.7e-08 63.9 337 26.1
Ciclev10024791m.g Citrus clementina HOM05D000240 ORTHO05D001140 3.5e-08 63.5 285 29.8
FvH4_2g10420 Fragaria vesca HOM05D000240 ORTHO05D001140 3.5e-08 63.5 280 29.3
Lsat_1_v5_gn_8_127960 Lactuca sativa HOM05D000240 ORTHO05D001140 6.0e-08 62.8 192 29.2
Lj9C383T6 Lonicera japonica HOM05D000240 ORTHO05D001140 6.0e-08 62.8 334 25.7
Manes.11G082000 Manihot esculenta HOM05D000240 ORTHO05D001140 6.0e-08 62.8 278 26.3
Aqoxy5G01479 Aquilegia oxysepala HOM05D000240 ORTHO05D001140 7.8e-08 62.4 336 26.2
Sabra09G0095600 Salix brachista HOM05D000240 ORTHO05D001140 7.8e-08 62.4 360 26.1
CSS0000401 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.0e-07 62.0 186 32.8
CSS0012846 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 1.0e-07 62.0 186 32.8
ClCG07G008290 Citrullus lanatus HOM05D000240 ORTHO05D001140 1.0e-07 62.0 268 25.7
COL.COLO4_26044 Corchorus olitorius HOM05D000240 ORTHO05D001140 3.0e-07 60.5 315 26.7
FAN20G2651 Fragaria x ananassa HOM05D000240 ORTHO05D001140 3.0e-07 60.5 279 27.6
CSS0039430 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001140 3.9e-07 60.1 189 31.2
AUR62016829 Chenopodium quinoa HOM05D000240 ORTHO05D001140 3.9e-07 60.1 190 28.9
AUR62010389 Chenopodium quinoa HOM05D000240 ORTHO05D001140 5.1e-07 59.7 190 30.0
Rhsim05G0068300 Rhododendron simsii HOM05D000240 ORTHO05D001140 5.1e-07 59.7 215 29.8
FAN27G0860 Fragaria x ananassa HOM05D000240 ORTHO05D001140 6.6e-07 59.3 280 28.6
THA.LOC104819184 Tarenaya hassleriana HOM05D000240 ORTHO05D001140 6.6e-07 59.3 117 37.6
Nitab4.5_0005932g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001140 8.7e-07 58.9 332 28.6
Phvul.011G038800 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 1.5e-06 58.2 188 34.6
CAN.G170.99 Capsicum annuum HOM05D000240 ORTHO05D001140 1.9e-06 57.8 223 31.4
FAN15G1376 Fragaria x ananassa HOM05D000240 ORTHO05D001140 2.5e-06 57.4 280 28.6
Duzib132G0506 Durio zibethinus HOM05D000240 ORTHO05D001140 3.3e-06 57.0 303 25.1
Medtr8g076190 Medicago truncatula HOM05D000240 ORTHO05D001140 4.3e-06 56.6 131 38.9
Lalb_Chr16g0391151 Lupinus albus HOM05D000240 ORTHO05D001140 7.3e-06 55.8 318 29.2
MD10G1063300 Malus domestica HOM05D000240 ORTHO05D001140 9.6e-06 55.5 206 31.6


User provided reference genes

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