Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.5e-308 1060.8 555 100.0
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 5.4e-216 754.6 557 71.6
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.2e-212 743.4 559 69.8
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.1e-212 742.7 555 69.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 3.2e-208 728.8 518 70.8
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 5.4e-208 728.0 590 64.9
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.3e-206 722.6 592 63.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.6e-206 721.1 603 62.9
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.1e-205 720.3 550 67.3
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.3e-205 718.4 559 66.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 9.5e-205 717.2 557 66.4
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 6.2e-204 714.5 549 68.1
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 6.2e-204 714.5 554 66.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 8.1e-204 714.1 511 68.9
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.5e-202 709.9 569 62.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.6e-202 709.1 595 61.2
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.4e-202 708.8 550 67.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 9.9e-202 707.2 609 63.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.2e-201 706.1 534 66.7
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.4e-200 702.6 511 69.7
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.2e-200 702.2 534 66.9
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.2e-200 702.2 547 65.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.1e-199 699.5 549 66.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.1e-197 693.7 602 62.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.5e-197 693.3 600 61.8
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.3e-197 692.2 529 65.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 4.3e-197 691.8 521 70.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.3e-197 691.0 549 64.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.7e-196 688.3 565 64.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.4e-195 686.8 527 66.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.4e-195 686.0 593 61.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.1e-195 685.6 523 66.0
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 6.8e-195 684.5 534 66.5
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.8e-195 684.5 585 60.2
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 8.9e-195 684.1 528 65.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 8.9e-195 684.1 526 66.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.4e-194 682.2 547 65.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.4e-194 682.2 514 68.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 5.8e-194 681.4 599 59.9
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.1e-192 677.2 538 66.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-192 677.2 549 63.9
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.1e-192 675.2 529 65.6
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 7.1e-192 674.5 547 63.6
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 7.1e-192 674.5 549 63.9
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.6e-191 673.3 532 68.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.7e-191 672.5 516 66.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.0e-190 670.6 518 66.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.7e-190 669.8 485 70.7
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-190 669.8 516 66.1
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.1e-188 662.9 558 62.0
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.2e-188 661.4 516 65.3
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.2e-187 658.3 532 63.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.9e-187 657.9 584 59.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.8e-186 654.8 523 64.6
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.9e-185 651.7 545 61.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 4.9e-185 651.7 537 62.8
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 5.4e-184 648.3 501 64.9
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.0e-182 644.0 594 57.6
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.7e-182 643.3 554 61.2
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.3e-182 642.9 535 63.0
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.0e-182 642.5 535 63.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.6e-182 641.3 559 60.1
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.1e-180 636.3 554 59.6
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.6e-180 635.6 516 63.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.8e-180 635.2 545 61.8
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.1e-179 632.5 534 62.2
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.0e-179 632.1 559 61.5
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.9e-179 631.3 647 56.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.9e-179 631.3 557 60.3
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.6e-178 629.4 482 67.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.5e-178 628.6 560 58.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 4.9e-177 625.2 546 60.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.9e-176 623.2 559 59.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-175 620.5 523 60.6
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.6e-175 620.2 549 58.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.0e-174 617.5 559 57.6
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.7e-174 614.8 548 59.7
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.5e-173 612.8 546 59.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.3e-173 612.5 548 58.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.6e-173 611.7 523 60.6
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 9.6e-173 610.9 559 57.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.6e-172 610.1 447 69.1
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.1e-171 607.4 522 60.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.4e-171 607.1 530 58.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-171 606.3 526 59.1
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 5.3e-171 605.1 581 55.2
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 9.0e-171 604.4 516 60.5
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.5e-170 603.6 526 58.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.0e-170 603.2 521 60.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 4.9e-169 598.6 582 56.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.6e-167 593.6 523 60.8
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.8e-166 590.1 558 57.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.4e-165 584.7 558 55.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-164 583.6 369 74.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.8e-164 582.8 656 50.9
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.8e-164 582.0 369 74.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 8.2e-164 581.3 523 58.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.1e-163 580.9 537 56.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.4e-163 579.7 596 54.0
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.4e-162 575.9 532 59.0
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.6e-159 565.5 526 56.3
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.7e-158 561.2 365 72.1
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.3e-156 557.4 534 55.6
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 6.3e-156 555.1 542 54.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.4e-155 553.9 555 53.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 7.6e-154 548.1 492 57.9
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.1e-150 535.4 414 62.6
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 3.3e-149 532.7 568 54.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.0e-146 523.5 532 54.5
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.8e-145 519.2 469 59.7
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.1e-144 517.7 526 54.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.0e-142 509.6 299 78.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 5.1e-142 508.8 578 52.4
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.3e-141 506.1 525 50.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.1e-139 499.2 553 51.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.9e-138 495.4 487 51.3
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 5.0e-137 492.3 509 49.7
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.9e-136 490.3 477 54.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.5e-136 488.8 315 71.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.2e-134 482.3 338 68.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.7e-129 467.2 451 55.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.6e-125 453.4 492 51.8
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.1e-123 448.0 485 52.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.1e-123 446.0 268 75.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.8e-121 439.5 452 53.5
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 6.8e-118 428.7 349 57.9
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.5e-117 427.6 364 55.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.6e-117 426.8 397 52.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 7.5e-117 425.2 364 54.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-115 421.4 585 40.9
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.4e-115 420.2 283 66.8
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.0e-115 418.7 606 40.1
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 9.1e-115 418.3 585 40.5
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.6e-114 417.5 592 40.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.6e-113 412.1 347 56.2
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-112 411.4 562 41.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.1e-111 407.1 614 38.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.8e-111 406.8 563 41.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-111 406.8 563 41.0
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.3e-108 397.9 414 50.7
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-108 397.5 589 39.4
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.7e-108 397.5 589 39.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 7.0e-107 392.1 290 66.6
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.0e-106 390.6 551 40.7
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.0e-106 390.6 551 40.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.7e-105 387.5 386 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 3.8e-105 386.3 557 40.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.6e-105 385.2 299 57.9
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.7e-100 369.8 226 73.0
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.1e-95 354.0 291 69.8
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.8e-94 350.9 208 78.4
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.9e-92 343.6 208 76.4
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 6.2e-87 325.9 566 40.3
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 3.1e-86 323.6 358 54.7
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.7e-82 310.5 272 68.4
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 6.6e-81 305.8 298 49.7
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.2e-67 260.4 606 34.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.6e-63 248.1 552 35.5
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.4e-54 218.4 166 62.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.2e-53 215.3 122 83.6
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.4e-53 213.8 325 43.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.6e-42 178.3 284 35.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.8e-41 174.9 133 62.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.5e-40 171.8 104 75.0
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-37 161.4 83 92.8
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.3e-32 144.1 82 76.8
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 9.1e-30 136.0 67 95.5
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.9e-27 128.3 103 55.3
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 4.2e-27 127.1 65 93.8
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.0e-24 118.2 226 37.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.4e-24 117.1 97 58.8
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.0e-17 95.9 293 31.1
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.3e-15 89.0 272 36.4
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 3.2e-11 74.3 210 29.0
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.7e-07 60.8 65 52.3


User provided reference genes

Program Settings