Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.7e-32 142.1 73 100.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 2.3e-26 121.7 73 79.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.0e-26 121.3 73 78.1
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.4e-25 117.5 75 85.3
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.7e-25 117.1 73 79.5
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.7e-25 117.1 73 76.7
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.5e-25 116.7 73 75.3
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.3e-24 115.9 73 76.7
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 76.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-24 114.8 74 79.7
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 75.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 76.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 76.7
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 4.9e-24 114.0 73 75.3
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.9e-24 114.0 74 77.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 6.3e-24 113.6 73 72.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 77.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 77.0
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 78.4
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 77.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 77.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.4e-23 112.5 74 74.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 74.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 72.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.1e-23 111.3 74 75.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 72.6
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 72.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 77.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 7.0e-23 110.2 74 75.7
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.0e-23 110.2 73 71.2
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.1e-23 109.8 73 71.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 74.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 72.6
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 3.5e-22 107.8 74 71.6
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.5e-22 107.5 75 70.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.3e-21 105.9 75 73.3
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.3e-21 105.9 73 68.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.7e-21 105.5 71 73.2
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.9e-21 104.8 74 71.6
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.8e-21 104.4 73 68.5
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 6.6e-21 103.6 75 73.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.5e-20 102.4 73 68.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-20 102.4 78 70.5
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-20 102.4 78 70.5
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.5e-20 102.4 73 68.5
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.9e-20 102.1 79 74.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.5e-20 101.7 59 79.7
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.5e-20 101.7 71 71.8
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 69.9
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.2e-20 100.9 73 67.1
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.5e-20 100.5 78 69.2
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.2e-20 100.1 71 71.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 9.5e-20 99.8 75 66.7
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.5e-20 99.8 78 69.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.5e-20 99.8 78 69.2
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.2e-19 99.4 79 68.4
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-19 99.4 78 67.9
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-19 99.4 78 67.9
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.6e-19 99.0 76 67.1
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.1e-19 98.6 74 68.9
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.1e-19 98.6 73 69.9
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.1e-19 98.6 78 67.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 64.4
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 3.6e-19 97.8 73 67.1
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.6e-19 97.8 61 78.7
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.7e-19 97.4 71 67.6
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.7e-19 97.4 79 70.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.7e-19 97.4 73 64.4
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.7e-19 97.4 79 69.6
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 4.7e-19 97.4 79 69.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.8e-18 95.5 66 68.2
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 73 65.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.3e-18 95.1 79 68.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 4.0e-18 94.4 73 68.5
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.0e-18 94.4 75 68.0
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 8.9e-18 93.2 74 63.5
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 72 69.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.5e-17 92.4 66 68.2
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 70 71.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.5e-17 92.4 80 62.5
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.0e-17 92.0 66 65.2
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 75 62.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.4e-17 91.3 75 62.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 5.7e-17 90.5 65 69.2
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 7.5e-17 90.1 66 62.1
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 7.5e-17 90.1 80 57.5
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 7.5e-17 90.1 80 60.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.8e-16 88.2 75 62.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 3.7e-16 87.8 78 60.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.7e-16 87.8 81 58.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.9e-16 87.4 73 58.9
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.3e-16 87.0 60 66.7
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 8.3e-16 86.7 79 60.8
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 8.3e-16 86.7 62 62.9
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-15 85.9 64 67.2
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-15 85.9 68 61.8
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 68 61.8
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 62 62.9
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-15 85.5 68 61.8
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 67.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 67.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 67.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 67.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 67.2
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.8e-15 85.5 68 61.8
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-15 85.5 64 62.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.4e-15 85.1 59 67.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.4e-15 85.1 78 59.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-15 83.6 64 65.6
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 9.2e-15 83.2 79 57.0
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 62.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 9.2e-15 83.2 47 76.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 9.2e-15 83.2 76 59.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-14 82.4 75 57.3
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-14 82.4 72 59.7
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.7e-14 81.6 62 61.3
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.7e-14 81.6 64 65.6
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.5e-14 81.3 78 59.0
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.6e-14 80.9 54 68.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.6e-14 80.9 75 56.0
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.6e-14 80.9 50 74.0
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 7.8e-14 80.1 77 59.7
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 7.8e-14 80.1 64 60.9
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 7.8e-14 80.1 57 70.2
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-13 79.7 50 74.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.3e-13 79.3 80 50.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-13 79.0 72 58.3
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.7e-13 79.0 56 69.6
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.7e-13 79.0 55 67.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.9e-13 78.2 47 72.3
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 5.0e-13 77.4 72 58.3
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 5.0e-13 77.4 75 49.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.6e-13 77.0 69 52.2
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 8.6e-13 76.6 74 55.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-12 76.3 73 52.1
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.1e-12 76.3 66 57.6
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-12 74.7 75 56.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-12 74.3 75 54.7
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-12 74.3 75 54.7
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-12 74.3 75 54.7
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-12 74.3 75 54.7
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 4.3e-12 74.3 75 54.7
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 5.6e-12 73.9 53 58.5
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 9.5e-12 73.2 73 53.4
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 9.5e-12 73.2 58 60.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.6e-11 72.4 47 70.2
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-11 71.6 64 60.9
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.7e-11 70.9 72 52.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 6.1e-11 70.5 51 54.9
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 3.1e-10 68.2 64 57.8
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.4e-09 64.3 35 85.7
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.0e-06 55.5 39 64.1
Rhsim07G0157000 Rhododendron simsii HOM05D052624 ORTHO05D050669 3.5e-06 54.7 44 75.0
Rhsim11G0016200 Rhododendron simsii HOM05D052624 ORTHO05D050669 3.5e-06 54.7 44 75.0


User provided reference genes

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