Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.3e-230 802.7 426 100.0
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.6e-210 735.3 395 99.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.9e-169 598.2 377 80.1
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.9e-169 598.2 377 80.1
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.9e-157 559.7 350 79.4
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 8.2e-148 527.7 362 74.6
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.4e-142 510.4 363 68.0
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.8e-142 510.0 347 75.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 3.7e-140 502.3 361 67.3
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 6.3e-140 501.5 357 68.1
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.2e-136 488.8 333 74.5
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.0e-134 484.2 358 65.9
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.6e-133 479.6 400 61.0
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.8e-132 476.1 396 61.6
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 4.1e-131 472.2 366 63.1
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 5.3e-131 471.9 362 63.8
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 9.1e-131 471.1 398 60.6
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 2.0e-130 469.9 399 63.2
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 3.8e-129 465.7 352 66.2
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 5.0e-129 465.3 399 58.6
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.5e-128 463.8 368 60.6
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 3.2e-128 462.6 400 58.5
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 5.2e-126 455.3 364 61.5
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-125 454.1 359 61.8
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 3.4e-125 452.6 359 62.4
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 2.2e-124 449.9 367 59.9
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 4.8e-124 448.7 359 61.0
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 6.3e-124 448.4 364 60.4
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.3e-124 448.4 397 56.9
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 9.1e-123 444.5 357 62.2
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.2e-122 444.1 400 57.0
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 2.7e-122 443.0 346 63.9
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.7e-122 443.0 364 59.9
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.5e-122 442.2 362 59.4
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.7e-121 440.3 399 56.9
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.3e-121 439.9 359 60.4
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 5.0e-121 438.7 362 61.0
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 8.6e-121 438.0 364 58.8
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 8.6e-121 438.0 366 59.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.1e-120 437.6 344 64.0
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.5e-120 434.5 344 62.8
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 9.5e-120 434.5 346 62.7
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.6e-119 433.7 271 81.2
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.1e-119 433.3 344 61.6
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.0e-118 431.0 402 57.2
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.4e-118 430.6 366 59.6
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.4e-118 430.6 359 59.3
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.8e-118 430.3 345 62.0
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.3e-118 429.9 350 60.6
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.2e-117 427.6 347 60.8
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 2.0e-117 426.8 398 55.5
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.0e-117 426.8 344 61.6
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 2.6e-117 426.4 343 60.3
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 7.5e-117 424.9 347 62.8
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.7e-116 423.7 350 60.0
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.4e-115 418.7 344 59.6
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 5.4e-115 418.7 399 55.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 9.2e-115 417.9 364 57.7
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.2e-114 417.5 356 58.7
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.2e-114 417.5 363 59.5
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.6e-114 417.2 364 57.4
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.6e-114 417.2 335 62.7
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 4.5e-114 415.6 347 59.7
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.5e-114 415.6 369 58.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.9e-114 415.2 361 59.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 1.3e-113 414.1 400 56.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 2.9e-113 412.9 399 56.1
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.1e-112 411.0 398 55.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.1e-112 411.0 358 58.9
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.5e-112 410.6 399 55.9
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.5e-112 410.6 399 55.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.5e-112 410.6 340 59.4
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 2.5e-112 409.8 347 58.5
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 2.5e-112 409.8 341 61.0
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 4.3e-112 409.1 406 56.2
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 7.3e-112 408.3 398 55.0
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.7e-111 405.6 353 58.4
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.8e-110 403.7 352 60.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.8e-110 403.7 352 60.2
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.3e-110 403.3 354 58.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.2e-109 401.0 369 56.1
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 3.4e-109 399.4 355 59.2
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.2e-108 396.7 352 57.7
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 3.2e-107 392.9 347 58.5
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.2e-107 392.9 318 60.7
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 5.4e-107 392.1 351 57.3
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 4.6e-106 389.0 360 55.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 3.6e-103 379.4 359 51.8
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.4e-102 377.5 331 56.8
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.2e-99 366.3 270 66.7
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 5.2e-94 349.0 259 65.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 2.2e-92 343.6 364 46.7
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.8e-86 323.9 276 56.5
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.4e-86 323.6 263 60.1
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.6e-82 310.8 264 57.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 7.8e-82 308.5 174 86.8
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.1e-75 288.1 369 42.3
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-61 241.1 302 46.7
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.8e-54 217.6 293 46.1
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.8e-54 217.6 368 33.2
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 3.4e-53 213.4 368 38.3
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 8.4e-52 208.8 353 37.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 7.7e-45 185.7 135 66.7
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.8e-44 183.3 146 61.0
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 2.5e-43 180.6 201 53.2
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.2e-43 180.3 146 61.0
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.8e-41 174.5 141 59.6
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 3.3e-32 143.7 365 29.0
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.2e-21 108.6 129 46.5
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 9.4e-19 99.0 84 58.3
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 4.1e-06 57.0 61 50.8
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 5.4e-06 56.6 60 51.7


User provided reference genes

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