Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.4e-99 365.5 192 100.0
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.1e-30 135.6 198 49.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.1e-30 135.6 198 49.0
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.2e-27 125.9 230 43.5
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.0e-25 120.9 221 45.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.0e-24 116.7 206 41.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.0e-24 116.7 207 39.6
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.4e-24 115.5 197 45.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.4e-24 115.5 196 40.8
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 7.5e-24 114.8 210 41.0
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 7.5e-24 114.8 196 42.9
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 9.8e-24 114.4 202 43.1
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.3e-23 114.0 194 43.8
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.8e-23 112.1 228 36.8
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 2.4e-22 109.8 199 42.7
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 7.0e-22 108.2 186 42.5
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 7.0e-22 108.2 210 41.9
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 9.1e-22 107.8 207 40.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-21 107.1 193 39.9
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.6e-21 107.1 235 36.2
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.7e-21 106.3 209 38.3
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.7e-21 106.3 229 34.9
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.7e-21 106.3 198 39.9
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 5.9e-21 105.1 221 36.2
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.9e-21 105.1 221 36.2
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.9e-21 105.1 221 36.2
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 5.9e-21 105.1 212 40.6
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.7e-20 103.6 219 40.2
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.7e-20 103.6 219 40.2
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.9e-20 102.8 224 39.7
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.8e-20 102.4 234 35.5
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 3.8e-20 102.4 204 41.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.0e-20 102.1 219 39.7
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 5.0e-20 102.1 175 40.6
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 5.0e-20 102.1 221 40.3
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 6.6e-20 101.7 205 41.5
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 6.6e-20 101.7 205 40.0
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 8.6e-20 101.3 227 40.1
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 8.6e-20 101.3 183 45.9
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-19 100.9 227 34.4
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 1.5e-19 100.5 209 42.6
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.9e-19 100.1 193 42.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.9e-19 100.1 239 37.2
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.5e-19 99.8 213 40.8
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 2.5e-19 99.8 211 39.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.5e-19 99.8 200 41.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.5e-19 99.8 203 42.4
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.3e-19 99.4 226 38.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 3.3e-19 99.4 228 40.4
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 9.5e-19 97.8 224 36.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.5e-19 97.8 229 33.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 9.5e-19 97.8 221 38.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 9.5e-19 97.8 138 45.7
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.2e-18 97.4 202 38.6
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.6e-18 97.1 203 40.9
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.1e-18 96.7 190 41.1
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.1e-18 96.7 181 40.3
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.6e-18 95.9 189 42.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 6.1e-18 95.1 205 39.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 8.0e-18 94.7 190 40.5
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.0e-17 94.4 189 38.1
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-17 93.6 233 33.9
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.3e-17 93.2 205 37.1
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 2.3e-17 93.2 233 33.9
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.3e-17 93.2 196 38.8
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.3e-17 93.2 235 38.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 4.0e-17 92.4 205 39.5
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.0e-17 92.4 225 38.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.2e-16 90.9 214 38.8
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-16 90.5 166 38.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.6e-16 89.7 209 38.3
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.4e-16 89.4 221 37.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 4.4e-16 89.0 180 40.6
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 9.8e-16 87.8 169 38.5
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.7e-15 87.0 214 37.4
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 4.9e-15 85.5 172 40.7
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.1e-14 84.3 121 45.5
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.1e-14 82.8 161 39.8
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 3.1e-14 82.8 226 34.5
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 4.1e-14 82.4 119 43.7
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.4e-14 82.0 208 34.6
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 5.4e-14 82.0 185 38.4
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 7.0e-14 81.6 144 43.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-13 80.9 196 35.7
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.5e-13 79.3 117 40.2
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.5e-13 79.0 133 39.8
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.0e-12 77.8 107 41.1
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.0e-12 77.8 177 38.4
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 1.3e-12 77.4 178 36.0
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.3e-12 77.4 193 35.2
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.7e-12 77.0 229 34.9
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 2.3e-12 76.6 188 34.0
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.9e-12 76.3 183 33.9
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.9e-12 76.3 196 36.2
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 3.8e-12 75.9 125 39.2
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 6.6e-12 75.1 191 34.0
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 6.6e-12 75.1 167 35.9
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 8.6e-12 74.7 184 36.4
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 8.6e-12 74.7 184 36.4
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 8.6e-12 74.7 157 35.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-11 74.3 194 34.5
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.1e-11 74.3 189 33.3
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.1e-11 74.3 119 42.0
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.9e-11 73.6 184 35.9
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 3.3e-11 72.8 232 32.3
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 4.3e-11 72.4 182 35.7
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.3e-11 72.4 200 34.5
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 4.3e-11 72.4 190 37.4
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 5.6e-11 72.0 205 34.1
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 9.5e-11 71.2 203 33.0
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.2e-10 70.9 177 34.5
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.8e-10 69.7 180 35.0
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 4.7e-10 68.9 196 37.2
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.7e-10 68.9 188 31.4
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 6.1e-10 68.6 117 38.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.1e-10 68.6 166 31.9
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 8.0e-10 68.2 207 31.9
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 8.0e-10 68.2 207 31.9
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.0e-10 68.2 187 34.8
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 8.0e-10 68.2 131 34.4
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.0e-09 67.8 182 37.9
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 1.0e-09 67.8 185 34.6
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-09 67.4 179 35.8
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 1.8e-09 67.0 191 34.6
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 2.3e-09 66.6 120 38.3
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.3e-09 66.6 115 40.0
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 5.2e-09 65.5 184 34.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 6.8e-09 65.1 189 32.3
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 8.9e-09 64.7 209 31.1
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 8.9e-09 64.7 106 43.4
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 8.9e-09 64.7 172 31.4
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.2e-08 64.3 181 31.5
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.0e-08 63.5 207 30.0
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 2.6e-08 63.2 116 40.5
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.4e-08 62.8 148 30.4
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 5.8e-08 62.0 202 30.7
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 5.8e-08 62.0 167 28.7
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 5.8e-08 62.0 196 34.7
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 7.5e-08 61.6 198 33.3
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.5e-08 61.6 218 29.8
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 7.5e-08 61.6 204 31.4
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.5e-08 61.6 113 33.6
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-07 60.8 117 36.8
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.3e-07 60.8 111 36.0
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 2.2e-07 60.1 180 29.4
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.2e-07 60.1 194 32.0
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 2.2e-07 60.1 189 33.9
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 2.9e-07 59.7 115 30.4
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 2.9e-07 59.7 211 30.3
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.9e-07 59.7 116 34.5
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 2.9e-07 59.7 185 33.0
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 3.7e-07 59.3 116 33.6
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 4.9e-07 58.9 185 31.4
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 6.4e-07 58.5 127 31.5
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 6.4e-07 58.5 101 39.6
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 6.4e-07 58.5 133 34.6
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 6.4e-07 58.5 145 30.3
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 6.4e-07 58.5 105 38.1
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.4e-07 58.5 116 33.6
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 8.3e-07 58.2 173 31.2
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 8.3e-07 58.2 173 31.2
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 8.3e-07 58.2 192 31.8
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.1e-06 57.8 188 30.9
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-06 57.8 110 34.5
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.9e-06 57.0 104 35.6
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.9e-06 57.0 112 36.6
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.9e-06 57.0 91 41.8
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 1.9e-06 57.0 108 38.0
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.9e-06 57.0 105 34.3
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.4e-06 56.6 173 30.1
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.4e-06 56.6 173 30.1
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 2.4e-06 56.6 115 36.5
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.2e-06 56.2 104 32.7
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 5.4e-06 55.5 101 34.7
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 5.4e-06 55.5 116 31.9
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.4e-06 55.5 189 29.6
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 5.4e-06 55.5 107 32.7
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.4e-06 55.5 119 32.8
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.4e-06 55.5 111 32.4
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 7.0e-06 55.1 175 31.4
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 7.0e-06 55.1 122 35.2
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 7.0e-06 55.1 118 31.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.2e-06 54.7 107 29.9
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 9.2e-06 54.7 174 29.3


User provided reference genes

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