Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.4e-116 422.9 211 100.0
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 8.0e-104 380.6 205 90.7
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 8.9e-103 377.1 209 88.5
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 8.9e-103 377.1 205 89.8
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.6e-99 366.3 209 86.6
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 2.3e-95 352.4 205 83.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 8.9e-95 350.5 210 83.3
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 9.8e-94 347.1 210 81.9
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 6.6e-90 334.3 210 78.6
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.5e-89 333.2 210 80.0
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 9.5e-89 330.5 210 77.6
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.4e-87 326.6 206 78.2
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.8e-87 326.2 211 79.1
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.1e-87 325.5 205 78.0
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.0e-87 325.1 210 78.6
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 4.0e-87 325.1 205 77.6
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 5.2e-87 324.7 190 83.2
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.5e-86 323.2 210 79.0
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.6e-86 322.4 211 75.4
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 3.4e-86 322.0 212 76.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.4e-86 321.6 209 74.6
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 9.9e-86 320.5 211 73.5
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.3e-85 320.1 210 73.8
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 2.2e-85 319.3 210 72.9
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 4.9e-85 318.2 210 71.9
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.1e-84 317.0 210 76.2
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.9e-84 316.2 210 73.3
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 1.6e-83 313.2 205 73.2
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 3.5e-83 312.0 227 69.2
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 4.6e-83 311.6 209 70.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.0e-82 310.5 210 78.1
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 1.3e-82 310.1 210 78.1
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 1.3e-82 310.1 210 78.1
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.7e-82 309.7 209 71.3
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 6.6e-82 307.8 207 70.0
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 6.6e-82 307.8 197 76.1
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.1e-81 307.0 210 70.0
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.5e-81 306.6 210 70.0
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.9e-81 306.2 210 77.1
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.5e-81 305.8 210 68.6
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 3.3e-81 305.4 209 70.8
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 4.3e-81 305.1 195 76.4
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.7e-80 301.6 211 71.6
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.7e-80 301.6 211 71.6
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 4.7e-80 301.6 211 71.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 6.2e-80 301.2 211 71.6
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.1e-79 300.4 181 80.1
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.1e-79 300.4 211 72.0
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.8e-79 299.7 234 69.2
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 7.6e-78 294.3 215 68.4
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.7e-77 293.1 209 66.5
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.9e-77 292.4 211 68.2
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 6.4e-77 291.2 211 68.7
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 6.4e-77 291.2 211 67.3
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 8.4e-77 290.8 208 68.8
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.1e-76 290.4 205 71.2
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.1e-76 290.4 209 70.3
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.9e-76 289.7 155 92.3
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.9e-76 289.7 211 68.2
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 2.4e-76 289.3 211 68.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 3.2e-76 288.9 209 68.4
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 5.4e-76 288.1 211 65.9
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 5.4e-76 288.1 211 66.8
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 7.1e-76 287.7 202 67.8
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.1e-76 287.7 211 67.3
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.1e-76 287.7 211 67.3
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.2e-75 287.0 196 70.4
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.1e-75 286.2 211 66.8
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-75 285.4 208 68.8
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 4.6e-75 285.0 211 66.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.6e-75 285.0 208 68.8
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 6.0e-75 284.6 203 74.9
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.8e-75 284.3 207 68.6
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.0e-74 283.9 210 66.2
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.7e-74 283.1 196 69.4
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.7e-74 283.1 205 68.3
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.7e-74 283.1 210 72.4
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 66.2
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.0e-74 282.3 211 64.5
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 3.0e-74 282.3 209 67.9
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.0e-74 282.3 211 65.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 5.1e-74 281.6 205 67.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 6.6e-74 281.2 205 67.8
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 8.7e-74 280.8 211 64.5
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.1e-73 280.4 210 65.7
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.1e-73 280.4 209 64.1
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-73 279.3 205 67.3
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 5.6e-73 278.1 210 65.2
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 9.6e-73 277.3 210 64.8
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.1e-72 276.2 210 65.2
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 3.6e-72 275.4 217 63.6
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 6.2e-72 274.6 210 64.3
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 9.0e-71 270.8 206 64.6
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.5e-70 270.0 191 68.6
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.6e-70 269.2 210 63.3
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.4e-70 268.5 187 67.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 7.6e-70 267.7 209 63.6
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.3e-69 266.9 205 63.9
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 1.3e-69 266.9 209 64.6
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 4.9e-69 265.0 210 62.9
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 6.4e-69 264.6 205 63.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 7.1e-68 261.2 214 61.7
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.1e-67 259.6 192 67.7
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 4.6e-67 258.5 207 58.0
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 2.3e-66 256.1 209 62.7
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.1e-63 247.3 186 64.0
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.4e-63 246.1 154 78.6
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.2e-60 235.7 211 54.0
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 8.1e-56 221.1 145 72.4
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 4.5e-54 215.3 167 58.1
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.7e-48 195.7 133 78.2
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.2e-46 190.7 177 52.5
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 5.0e-45 185.3 209 50.7
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.5e-41 173.7 113 73.5
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.1e-31 141.0 179 37.4
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 6.9e-31 138.3 79 78.5
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 3.4e-30 136.0 171 42.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.4e-26 124.0 114 49.1
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.8e-26 123.6 172 41.9
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 2.0e-25 120.2 63 85.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.0e-22 110.2 105 56.2
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 9.4e-20 101.3 71 69.0
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 5.2e-18 95.5 183 35.5
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 5.7e-17 92.0 50 82.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 8.2e-16 88.2 88 56.8
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 8.5e-13 78.2 59 64.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.7e-11 73.2 55 65.5
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 8.0e-11 71.6 40 87.5
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 4.0e-10 69.3 48 70.8
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.2e-09 67.8 83 45.8
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.5e-09 67.4 78 46.2
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.6e-09 66.6 152 33.6
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 2.6e-09 66.6 49 65.3


User provided reference genes

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