Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.7e-66 256.1 155 100.0
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.9e-57 226.1 154 81.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.3e-21 107.1 146 52.7
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.7e-21 105.5 145 66.9
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.2e-19 100.5 149 48.3
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.4e-19 99.0 127 63.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.0e-18 97.4 152 50.7
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.1e-17 94.0 150 48.7
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.7e-16 89.4 136 50.7
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 4.6e-16 88.6 136 51.5
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.8e-15 86.7 136 50.0
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.8e-15 86.7 131 49.6
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.9e-15 85.5 136 48.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 3.9e-15 85.5 136 48.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.9e-15 85.5 136 50.0
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 5.1e-15 85.1 121 46.3
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.7e-15 84.7 149 45.6
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 6.7e-15 84.7 125 48.8
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 8.7e-15 84.3 137 54.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-14 84.0 118 51.7
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.5e-14 83.6 152 44.7
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.9e-14 83.2 147 44.9
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.5e-14 82.8 122 52.5
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 5.7e-14 81.6 153 43.8
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 5.7e-14 81.6 153 43.8
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 9.7e-14 80.9 143 46.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 9.7e-14 80.9 124 47.6
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.2e-13 79.7 149 43.6
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 3.7e-13 79.0 140 58.6
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.7e-13 79.0 121 46.3
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 1.8e-12 76.6 145 42.8
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.8e-12 76.6 131 56.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.8e-12 76.6 131 56.5
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.4e-12 76.3 123 43.9
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 4.1e-12 75.5 123 43.1
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 4.1e-12 75.5 145 44.1
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 5.3e-12 75.1 137 44.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 6.9e-12 74.7 118 47.5
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-11 73.9 145 44.1
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-11 73.9 143 41.3
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.5e-11 73.6 145 46.2
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.4e-11 72.4 124 56.5
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 4.5e-11 72.0 142 41.5
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 4.5e-11 72.0 117 47.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 5.9e-11 71.6 147 43.5
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 5.9e-11 71.6 144 39.6
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 7.7e-11 71.2 144 54.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 7.7e-11 71.2 121 47.1
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.0e-10 70.9 118 50.8
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 1.7e-10 70.1 144 51.4
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.9e-10 69.3 141 44.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.8e-10 68.9 137 42.3
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 6.5e-10 68.2 126 42.9
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.5e-10 68.2 123 43.1
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 6.5e-10 68.2 150 40.0
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 8.5e-10 67.8 111 48.6
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.1e-09 67.4 142 44.4
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.9e-09 66.6 148 39.9
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 3.2e-09 65.9 143 41.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 5.5e-09 65.1 117 47.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.2e-08 63.9 124 39.5
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.2e-08 63.9 118 40.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.6e-08 63.5 122 40.2
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.6e-08 63.5 130 42.3
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 2.1e-08 63.2 124 44.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.6e-08 62.4 148 36.5
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 4.6e-08 62.0 148 36.5
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 4.6e-08 62.0 139 37.4
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 2.3e-07 59.7 154 31.8
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.3e-07 59.7 127 48.0
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.3e-07 59.7 139 39.6
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.0e-07 59.3 126 37.3
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 3.9e-07 58.9 153 35.3
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.9e-07 58.9 148 35.1
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 5.1e-07 58.5 137 33.6
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 6.7e-07 58.2 122 36.9
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 8.8e-07 57.8 122 52.5
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.1e-06 57.4 151 31.1
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.0e-06 56.6 149 34.9
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.5e-06 56.2 156 34.0
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 3.3e-06 55.8 146 34.2
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.3e-06 55.8 116 42.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 4.3e-06 55.5 149 34.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 4.3e-06 55.5 75 53.3
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 7.4e-06 54.7 48 64.6
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 7.4e-06 54.7 118 42.4


User provided reference genes

Program Settings