Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.2e-166 589.7 296 100.0
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.2e-166 589.7 296 100.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 9.7e-148 526.9 298 88.6
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 3.2e-143 511.9 297 85.5
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.7e-142 508.8 296 84.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 2.9e-136 488.8 284 84.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.2e-135 485.3 309 80.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 5.2e-133 478.0 297 80.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 9.8e-132 473.8 295 78.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 6.3e-131 471.1 296 78.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.0e-128 463.8 296 76.7
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.8e-128 461.8 367 67.0
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.9e-127 459.5 296 77.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.3e-127 458.8 296 77.4
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 7.3e-127 457.6 296 78.4
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.2e-126 456.8 296 75.3
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.2e-126 456.8 296 77.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.8e-126 455.7 299 74.9
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 6.1e-126 454.5 296 78.4
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.1e-126 454.5 297 76.4
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.0e-125 453.8 299 75.6
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.3e-125 452.6 297 76.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 5.2e-125 451.4 297 76.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.4e-124 448.4 296 74.7
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.3e-123 446.8 299 75.9
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.7e-123 446.4 296 74.7
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.2e-123 446.0 296 75.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 3.7e-123 445.3 296 73.6
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.8e-122 443.0 299 74.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 4.1e-122 441.8 296 73.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.0e-121 439.5 320 71.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.7e-121 439.1 299 72.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.7e-121 439.1 296 73.3
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 3.5e-121 438.7 296 74.7
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 7.8e-121 437.6 296 73.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.0e-120 437.2 303 73.3
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.0e-120 434.9 299 73.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 6.6e-120 434.5 295 73.9
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.3e-119 431.8 296 73.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.3e-119 431.8 298 72.8
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.2e-118 430.3 295 73.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.1e-118 429.5 295 73.2
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 8.0e-118 427.6 300 72.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.4e-117 426.8 300 72.3
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.4e-117 426.8 296 72.0
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.3e-117 426.0 296 74.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 8.9e-117 424.1 295 72.9
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.6e-116 422.5 297 71.7
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 5.8e-116 421.4 296 70.9
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 9.8e-116 420.6 295 73.6
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 2.2e-115 419.5 296 72.6
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.9e-115 418.3 300 70.7
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 4.9e-115 418.3 277 74.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 6.4e-115 417.9 299 69.6
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.4e-114 416.8 296 69.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.4e-114 416.0 298 71.5
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 3.2e-114 415.6 296 71.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.1e-114 415.2 299 69.9
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 7.0e-114 414.5 255 80.0
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 7.0e-114 414.5 255 82.0
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 9.2e-114 414.1 252 81.0
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.0e-113 412.9 255 80.8
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.0e-113 412.9 298 70.8
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.5e-113 412.1 296 71.3
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 4.6e-113 411.8 299 70.2
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.0e-113 411.4 299 69.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 7.8e-113 411.0 299 70.6
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.0e-112 410.6 283 73.5
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.0e-112 409.1 297 69.4
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.9e-112 408.7 297 70.4
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.6e-112 407.9 296 71.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.5e-111 406.8 296 69.9
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.5e-111 406.8 298 71.5
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 70.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 5.6e-111 404.8 311 65.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 5.6e-111 404.8 229 84.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 7.3e-111 404.4 296 69.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 7.3e-111 404.4 299 69.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.1e-110 402.9 296 69.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 6.2e-110 401.4 296 68.9
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 8.1e-110 401.0 331 65.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.1e-110 401.0 298 68.5
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.1e-110 401.0 298 70.5
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-109 400.2 298 68.5
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.4e-109 400.2 299 70.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.3e-109 399.4 331 63.1
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.8e-109 397.9 297 69.4
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 8.9e-109 397.5 302 67.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.4e-108 395.6 296 67.6
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 5.8e-108 394.8 298 67.8
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 5.8e-108 394.8 295 70.2
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.9e-107 392.5 257 75.1
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.9e-107 392.5 257 75.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.9e-107 392.5 257 75.1
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 8.3e-107 391.0 296 67.6
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.1e-106 390.6 300 67.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.2e-105 387.1 294 67.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.8e-105 384.4 302 66.9
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.3e-104 383.6 299 66.2
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-104 383.3 299 65.6
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.5e-103 379.4 284 69.4
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.8e-102 375.9 296 66.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.4e-100 369.0 295 66.8
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.8e-100 368.2 297 65.0
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.7e-99 366.7 291 65.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 4.9e-99 365.2 347 58.8
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.1e-98 364.0 226 77.9
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.6e-97 358.6 257 72.4
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.0e-96 357.5 224 76.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.0e-96 357.5 221 78.3
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.3e-96 356.3 243 72.8
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.8e-94 349.4 294 60.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 9.9e-92 340.9 287 64.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 8.4e-91 337.8 248 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.5e-89 332.4 226 70.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 5.1e-88 328.6 264 65.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 8.7e-88 327.8 261 65.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.3e-86 323.9 225 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.6e-86 322.4 232 69.0
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.4e-85 320.5 261 66.7
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.9e-85 318.2 205 76.6
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.5e-84 317.0 228 67.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 4.5e-84 315.5 217 72.4
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 7.4e-79 298.1 219 65.8
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.6e-71 271.9 424 41.3
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.1e-69 266.2 299 48.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.5e-68 263.8 230 58.3
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-65 253.8 216 56.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.3e-63 245.7 237 50.6
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-62 243.8 221 52.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.7e-62 242.7 142 84.5
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-58 231.1 142 79.6
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-55 220.7 155 69.0
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.3e-55 219.2 133 80.5
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.8e-54 215.7 278 42.1
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.9e-53 211.8 250 44.4
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.0e-52 210.3 249 44.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 7.2e-50 201.8 186 57.0
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 7.7e-44 181.8 282 42.6
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 7.7e-44 181.8 167 58.1
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 4.2e-42 176.0 112 77.7
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.3e-39 166.4 99 83.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-36 157.9 97 82.5
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.9e-35 153.3 178 47.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 4.0e-32 142.9 157 51.6
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.3e-30 137.9 81 79.0
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-28 131.3 101 70.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.6e-28 131.0 154 50.0
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.2e-26 123.2 108 62.0
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 3.7e-22 109.8 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.9e-19 100.1 120 46.7
HanXRQChr02g0035921 Helianthus annuus HOM05D004985 ORTHO05D005912 4.7e-09 66.2 76 50.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 6.8e-08 62.4 176 31.8


User provided reference genes

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