Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.3e-123 443.7 228 100.0
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.0e-120 436.8 228 98.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-93 346.7 232 77.6
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.3e-93 344.7 232 77.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 8.7e-88 327.4 232 72.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.3e-87 325.1 232 74.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.3e-80 302.8 231 68.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.7e-80 301.2 228 70.2
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 6.7e-80 301.2 233 68.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.9e-79 299.7 233 66.1
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.3e-79 298.5 223 69.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 7.4e-79 297.7 221 67.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.6e-78 296.6 217 71.4
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 2.4e-77 292.7 219 66.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.9e-77 291.2 213 72.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.0e-76 289.7 222 65.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.4e-76 288.9 222 65.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 4.5e-76 288.5 233 63.9
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 5.9e-76 288.1 233 67.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.2e-74 282.0 219 63.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 9.4e-74 280.8 219 63.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.2e-73 280.4 230 63.5
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.6e-73 280.0 232 64.7
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.1e-73 279.6 217 67.3
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.8e-72 276.6 221 65.2
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.8e-72 276.6 220 64.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 8.8e-72 274.2 220 63.2
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.1e-71 273.9 230 61.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-71 273.9 230 61.3
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-71 273.9 230 61.3
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.0e-71 273.1 223 66.4
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.5e-71 272.7 221 62.9
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.5e-71 272.7 230 61.7
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.7e-71 270.8 234 61.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 9.7e-71 270.8 223 62.8
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-70 270.4 233 59.7
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.3e-70 270.4 227 62.6
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.2e-70 269.6 232 61.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.8e-70 269.2 230 60.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.8e-70 268.5 217 62.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.2e-70 267.7 230 60.4
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.2e-70 267.7 230 60.0
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.8e-69 266.5 222 62.6
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.1e-69 265.4 230 59.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.3e-67 260.4 228 58.8
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.4e-66 256.9 224 62.9
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.2e-66 255.8 220 60.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.0e-64 250.8 232 56.0
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 3.0e-64 249.2 224 59.8
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.9e-64 248.8 224 59.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 5.1e-64 248.4 229 57.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 8.8e-64 247.7 225 59.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.8e-64 247.7 227 55.9
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.1e-63 247.3 221 59.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 2.6e-63 246.1 220 58.6
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.6e-63 246.1 220 62.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 4.4e-63 245.4 183 66.7
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.4e-63 245.4 225 55.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 5.7e-63 245.0 217 59.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-62 243.4 180 66.1
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.7e-62 243.4 222 57.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 3.7e-62 242.3 217 58.1
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 3.7e-62 242.3 188 66.0
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.8e-61 240.0 223 57.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.8e-61 240.0 234 52.1
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.3e-61 238.4 182 65.4
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.5e-60 236.9 234 52.1
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 2.6e-60 236.1 234 52.1
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.5e-60 235.3 227 54.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 7.7e-60 234.6 225 56.0
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.7e-59 233.4 221 54.8
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 6.5e-59 231.5 220 55.9
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 8.5e-59 231.1 232 54.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.9e-58 229.9 230 52.6
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-58 229.6 176 63.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.3e-56 223.0 174 61.5
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.7e-56 221.5 216 52.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 8.8e-56 221.1 205 58.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-55 220.3 217 54.8
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.5e-55 220.3 217 54.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 3.3e-55 219.2 220 52.7
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.8e-54 216.1 220 53.2
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.8e-54 216.1 197 55.8
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.8e-54 215.3 177 59.3
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.8e-54 215.3 177 59.3
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 6.3e-54 214.9 187 58.3
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.1e-53 214.2 219 53.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.4e-53 213.0 197 54.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 3.1e-53 212.6 214 51.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 4.1e-53 212.2 230 50.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.1e-53 212.2 217 54.4
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.0e-53 211.5 233 49.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 7.0e-53 211.5 219 54.8
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.2e-52 210.7 231 49.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-52 209.9 180 65.6
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.5e-52 209.1 233 48.9
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.5e-52 209.1 233 48.9
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 3.5e-52 209.1 217 51.2
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-51 207.2 197 53.3
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.1e-50 204.1 184 57.6
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.5e-50 203.8 181 58.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.2e-50 202.6 167 62.3
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 3.2e-50 202.6 231 49.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 3.2e-50 202.6 173 63.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 5.5e-50 201.8 234 49.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 9.4e-50 201.1 218 50.5
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 9.4e-50 201.1 181 58.0
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.6e-49 200.3 231 49.4
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.1e-49 199.9 220 51.8
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.6e-49 199.1 231 50.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.6e-49 199.1 222 49.5
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.6e-49 199.1 222 49.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.1e-49 198.4 181 57.5
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.1e-49 198.4 217 52.5
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 8.0e-49 198.0 214 49.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.0e-48 197.6 212 52.8
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.4e-48 197.2 220 50.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.0e-48 196.1 218 50.5
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.0e-47 193.4 222 45.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 5.7e-47 191.8 181 55.2
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 5.7e-47 191.8 181 55.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.7e-47 191.8 134 67.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 5.7e-47 191.8 217 52.1
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.7e-46 190.3 188 53.7
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.2e-46 189.9 234 48.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.1e-45 187.6 184 53.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.1e-45 187.6 184 54.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.1e-45 186.0 165 57.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.6e-44 183.7 167 55.1
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.0e-43 181.0 212 49.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.7e-43 180.3 158 56.3
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.2e-43 179.9 216 49.1
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.5e-43 178.3 218 47.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.5e-42 176.4 216 46.3
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 9.4e-42 174.5 229 45.9
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 9.4e-42 174.5 211 45.0
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 4.7e-41 172.2 204 51.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.0e-40 171.0 105 80.0
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.0e-39 166.8 116 67.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 8.3e-38 161.4 150 52.7
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 3.1e-37 159.5 122 63.1
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 9.1e-37 157.9 117 64.1
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.2e-36 157.5 143 56.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.9e-35 152.9 228 42.1
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 6.6e-35 151.8 235 39.6
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.5e-34 147.9 131 53.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.6e-25 119.4 114 50.0
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.1e-24 116.3 118 47.5
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 8.9e-24 114.8 132 50.8
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.7e-22 110.5 82 64.6
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.5e-15 87.4 89 46.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 4.4e-15 85.9 211 31.8
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.5e-15 85.1 72 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.1e-13 81.3 222 29.3
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.2e-13 79.7 141 31.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.7e-12 76.6 95 36.8
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-11 73.9 183 27.9
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-06 56.2 93 30.1
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.7e-06 56.2 186 26.3


User provided reference genes

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