Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 5.0e-85 317.8 165 100.0
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 1.2e-57 226.9 161 75.8
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 5.8e-57 224.6 164 73.8
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 2.9e-56 222.2 149 76.5
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 8.3e-56 220.7 163 70.6
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 1.4e-55 219.9 149 75.8
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 2.7e-54 215.7 164 70.1
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.2e-51 206.8 163 68.1
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 2.1e-51 206.1 163 67.5
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 2.1e-51 206.1 163 66.9
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 2.3e-50 202.6 161 67.7
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 3.1e-50 202.2 163 68.1
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 5.2e-50 201.4 159 70.4
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 1.5e-49 199.9 166 66.9
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 2.6e-49 199.1 164 68.9
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 1.3e-48 196.8 129 75.2
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 2.9e-48 195.7 129 76.0
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 8.3e-48 194.1 129 73.6
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.1e-47 193.7 129 73.6
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 1.9e-47 193.0 164 63.4
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.9e-47 193.0 125 75.2
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 4.1e-47 191.8 163 63.8
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 2.1e-46 189.5 164 65.9
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 2.7e-46 189.1 121 79.3
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 4.6e-46 188.3 127 77.2
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 4.6e-46 188.3 163 63.8
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 1.0e-45 187.2 127 76.4
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 1.3e-45 186.8 121 76.9
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 1.7e-45 186.4 162 66.0
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 8.6e-45 184.1 141 68.1
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 1.9e-44 183.0 127 73.2
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 2.5e-44 182.6 164 59.8
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 2.5e-44 182.6 165 61.2
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 7.3e-44 181.0 163 62.0
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 9.5e-44 180.6 163 62.6
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 1.6e-43 179.9 126 71.4
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 2.1e-43 179.5 166 61.4
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 2.1e-43 179.5 166 61.4
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 2.1e-43 179.5 166 61.4
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 3.6e-43 178.7 126 71.4
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 8.1e-43 177.6 166 60.8
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 8.1e-43 177.6 166 60.8
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 8.1e-43 177.6 127 72.4
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 8.1e-43 177.6 162 61.1
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 8.1e-43 177.6 169 61.5
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 1.1e-42 177.2 163 59.5
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 1.4e-42 176.8 165 59.4
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 1.8e-42 176.4 167 58.1
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.8e-42 176.4 124 71.0
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 2.3e-42 176.0 166 60.2
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 5.2e-42 174.9 165 61.8
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.2e-41 173.7 164 61.6
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 1.2e-41 173.7 126 72.2
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 2.0e-41 172.9 115 75.7
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 2.0e-41 172.9 165 58.2
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 2.6e-41 172.6 163 58.9
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 2.6e-41 172.6 121 67.8
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 3.4e-41 172.2 167 58.7
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 4.4e-41 171.8 164 59.8
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 1.7e-40 169.9 121 66.9
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 2.2e-40 169.5 168 57.7
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 2.2e-40 169.5 137 67.2
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 2.2e-40 169.5 165 58.8
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 4.9e-40 168.3 126 69.0
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 8.4e-40 167.5 159 58.5
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 8.4e-40 167.5 126 67.5
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 3.2e-39 165.6 120 70.0
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 6.0e-38 161.4 100 76.0
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 7.8e-38 161.0 164 55.5
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 1.3e-37 160.2 171 56.1
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 3.9e-37 158.7 123 65.0
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 5.1e-37 158.3 135 63.0
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 8.6e-37 157.5 134 64.9
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 2.5e-36 156.0 137 64.2
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 3.3e-36 155.6 122 68.0
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 2.8e-35 152.5 137 61.3
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.1e-34 150.6 163 53.4
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 2.4e-34 149.4 163 51.5
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 5.2e-34 148.3 166 54.2
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 6.9e-34 147.9 116 70.7
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 4.4e-33 145.2 96 70.8
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 1.7e-32 143.3 165 53.3
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 2.2e-32 142.9 136 60.3
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 6.4e-32 141.4 158 55.1
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 2.7e-30 136.0 98 73.5
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 1.7e-29 133.3 94 74.5
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 7.3e-28 127.9 128 54.7
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.3e-27 127.1 97 70.1
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 1.4e-26 123.6 147 53.7
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 5.3e-26 121.7 90 71.1
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 1.7e-24 116.7 112 61.6
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 4.9e-24 115.2 71 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 4.2e-23 112.1 111 50.5
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 1.6e-22 110.2 113 48.7
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 2.7e-22 109.4 174 44.8
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 2.7e-22 109.4 150 41.3
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 2.3e-21 106.3 166 44.0
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 3.6e-19 99.0 117 45.3
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 5.3e-18 95.1 151 44.4
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 9.9e-17 90.9 119 43.7
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 1.7e-16 90.1 119 43.7
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 2.4e-15 86.3 94 60.6
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 3.2e-15 85.9 125 43.2
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 4.3e-12 75.5 86 51.2
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 2.8e-11 72.8 123 40.7
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 2.9e-08 62.8 163 32.5


User provided reference genes

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