Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040473 Camellia sinensis var. sinensis HOM05D003087 ORTHO05D003312 4.4e-77 291.2 145 100.0
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 2.8e-39 165.6 145 57.9
Rhsim06G0214600 Rhododendron simsii HOM05D003087 ORTHO05D003312 6.4e-36 154.5 146 52.7
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 7.4e-32 141.0 146 50.0
Oeu020132.1 Olea europaea HOM05D003087 ORTHO05D003312 5.3e-30 134.8 143 47.6
Hma1.2p1_1271F.1_g271870 Hydrangea macrophylla HOM05D003087 ORTHO05D003312 3.5e-26 122.1 137 47.4
Migut.M01788 Erythranthe guttata HOM05D003087 ORTHO05D003312 3.9e-25 118.6 140 45.0
Manes.03G091200 Manihot esculenta HOM05D003087 ORTHO05D003312 2.8e-23 112.5 143 42.7
Duzib268G1323 Durio zibethinus HOM05D003087 ORTHO05D003312 6.2e-23 111.3 143 44.8
Manes.03G091400 Manihot esculenta HOM05D003087 ORTHO05D003312 6.2e-23 111.3 143 44.1
Potri.011G136200 Populus trichocarpa HOM05D003087 ORTHO05D003312 3.1e-22 109.0 143 43.4
Sabra11G0122300 Salix brachista HOM05D003087 ORTHO05D003312 2.0e-21 106.3 143 42.7
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 1.7e-20 103.2 149 40.9
Potri.001G420500 Populus trichocarpa HOM05D003087 ORTHO05D003312 3.8e-20 102.1 143 42.7
Sabra16G0285500 Salix brachista HOM05D003087 ORTHO05D003312 8.4e-20 100.9 143 41.3
Glyma.14G025750 Glycine max HOM05D003087 ORTHO05D003312 1.1e-19 100.5 143 43.4
Eucgr.L03287 Eucalyptus grandis HOM05D003087 ORTHO05D003312 1.4e-19 100.1 143 40.6
Manes.15G074400 Manihot esculenta HOM05D003087 ORTHO05D003312 2.1e-18 96.3 150 37.3
Atru.chr2.3270 Acer truncatum HOM05D003087 ORTHO05D003312 6.0e-18 94.7 144 42.4
Atru.chr2.3271 Acer truncatum HOM05D003087 ORTHO05D003312 6.0e-18 94.7 144 41.0
Atru.chr2.3272 Acer truncatum HOM05D003087 ORTHO05D003312 7.9e-18 94.4 143 38.5
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 7.9e-18 94.4 143 44.1
Prupe.4G208300 Prunus persica HOM05D003087 ORTHO05D003312 4.3e-16 88.6 141 39.7
CiPaw.11G186600 Carya illinoinensis HOM05D003087 ORTHO05D003312 5.7e-16 88.2 143 39.2
Glyma.02G289100 Glycine max HOM05D003087 ORTHO05D003312 6.3e-15 84.7 145 42.1
Lj6g0025252 Lotus japonicus HOM05D003087 ORTHO05D003312 6.3e-15 84.7 141 36.9
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 6.3e-15 84.7 141 36.9
Manes.03G127400 Manihot esculenta HOM05D003087 ORTHO05D003312 8.2e-15 84.3 143 37.1
Carub.0003s2703 Capsella rubella HOM05D003087 ORTHO05D003312 1.4e-14 83.6 143 35.7
QL08p012142 Quercus lobata HOM05D003087 ORTHO05D003312 1.4e-14 83.6 147 36.7
Lalb_Chr04g0248611 Lupinus albus HOM05D003087 ORTHO05D003312 5.3e-14 81.6 145 36.6
Medtr7g029260 Medicago truncatula HOM05D003087 ORTHO05D003312 5.3e-14 81.6 145 36.6
QL08p011993 Quercus lobata HOM05D003087 ORTHO05D003312 9.0e-14 80.9 143 37.8
A03p62650 Brassica napus HOM05D003087 ORTHO05D003312 1.2e-13 80.5 144 35.4
BcaNung03364 Brassica carinata HOM05D003087 ORTHO05D003312 1.5e-13 80.1 144 35.4
C07p60200 Brassica napus HOM05D003087 ORTHO05D003312 1.5e-13 80.1 144 35.4
BolC7t46461H Brassica oleracea HOM05D003087 ORTHO05D003312 1.5e-13 80.1 144 35.4
Phvul.008G265200 Phaseolus vulgaris HOM05D003087 ORTHO05D003312 1.5e-13 80.1 149 35.6
QL08p012174 Quercus lobata HOM05D003087 ORTHO05D003312 1.5e-13 80.1 143 37.1
Cfa020390 Carpinus fangiana HOM05D003087 ORTHO05D003312 2.0e-13 79.7 146 37.7
BraA03t15334Z Brassica rapa HOM05D003087 ORTHO05D003312 3.4e-13 79.0 144 34.7
Haze_09620 Corylus avellana HOM05D003087 ORTHO05D003312 5.9e-13 78.2 147 36.1
CANSAT78G0127 Cannabis sativa HOM05D003087 ORTHO05D003312 7.7e-13 77.8 148 37.8
LjContig00272g0016451 Lotus japonicus HOM05D003087 ORTHO05D003312 7.7e-13 77.8 143 35.7
Lalb_Chr02g0152671 Lupinus albus HOM05D003087 ORTHO05D003312 1.3e-12 77.0 145 36.6
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 1.3e-12 77.0 141 34.0
AT2G17305 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.7e-12 76.6 101 39.6
Sp7g31920 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.7e-12 76.6 143 35.0
AL3G50190 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 2.9e-12 75.9 108 37.0
Cfa020391 Carpinus fangiana HOM05D003087 ORTHO05D003312 2.9e-12 75.9 147 36.1
MD11G1222800 Malus domestica HOM05D003087 ORTHO05D003312 5.0e-12 75.1 145 37.2
Sp6g16770 Schrenkiella parvula HOM05D003087 ORTHO05D003312 6.5e-12 74.7 115 36.5
Thhalv10027438m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 8.5e-12 74.3 108 38.9
Psat5g183360 Pisum sativum HOM05D003087 ORTHO05D003312 1.1e-11 73.9 146 33.6
Prupe.4G208200 Prunus persica HOM05D003087 ORTHO05D003312 1.1e-11 73.9 143 32.9
Lj5g0027658 Lotus japonicus HOM05D003087 ORTHO05D003312 1.9e-11 73.2 143 34.3
LjContig00272g0019978 Lotus japonicus HOM05D003087 ORTHO05D003312 3.2e-11 72.4 143 34.3
Duzib170G0141 Durio zibethinus HOM05D003087 ORTHO05D003312 5.5e-11 71.6 82 43.9
BcaNung03799 Brassica carinata HOM05D003087 ORTHO05D003312 7.2e-11 71.2 144 32.6
C01p04660 Brassica napus HOM05D003087 ORTHO05D003312 7.2e-11 71.2 144 32.6
BolC1t00449H Brassica oleracea HOM05D003087 ORTHO05D003312 7.2e-11 71.2 144 32.6
Cpa.g.sc97.41 Carica papaya HOM05D003087 ORTHO05D003312 9.4e-11 70.9 110 40.0
Glyma.10G200400 Glycine max HOM05D003087 ORTHO05D003312 9.4e-11 70.9 143 32.9
Carub.0003s3127 Capsella rubella HOM05D003087 ORTHO05D003312 1.6e-10 70.1 111 38.7
A01p04270 Brassica napus HOM05D003087 ORTHO05D003312 2.1e-10 69.7 144 32.6
BraA01t00416Z Brassica rapa HOM05D003087 ORTHO05D003312 2.1e-10 69.7 144 32.6
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 3.6e-10 68.9 111 35.1
Eucgr.F00967 Eucalyptus grandis HOM05D003087 ORTHO05D003312 6.1e-10 68.2 84 45.2
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 7.9e-10 67.8 128 32.8
Carub.0004s0417 Capsella rubella HOM05D003087 ORTHO05D003312 1.0e-09 67.4 142 32.4
MELO3C003962.2 Cucumis melo HOM05D003087 ORTHO05D003312 1.0e-09 67.4 145 32.4
Lj5g0022613 Lotus japonicus HOM05D003087 ORTHO05D003312 2.3e-09 66.2 143 32.9
AL5G44970 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 3.0e-09 65.9 150 34.7
arahy.Tifrunner.gnm1.ann1.BT26ZR Arachis hypogaea HOM05D003087 ORTHO05D003312 3.0e-09 65.9 145 34.5
Prupe.4G208100 Prunus persica HOM05D003087 ORTHO05D003312 3.0e-09 65.9 144 30.6
THA.LOC104812534 Tarenaya hassleriana HOM05D003087 ORTHO05D003312 3.0e-09 65.9 114 35.1
Medtr3g448340 Medicago truncatula HOM05D003087 ORTHO05D003312 3.9e-09 65.5 147 33.3
CARHR117950 Cardamine hirsuta HOM05D003087 ORTHO05D003312 5.1e-09 65.1 125 36.0
Sp4g03660 Schrenkiella parvula HOM05D003087 ORTHO05D003312 5.1e-09 65.1 109 33.9
Medtr5g066890 Medicago truncatula HOM05D003087 ORTHO05D003312 6.7e-09 64.7 86 41.9
TPR.G37757 Trifolium pratense HOM05D003087 ORTHO05D003312 6.7e-09 64.7 121 32.2
arahy.Tifrunner.gnm1.ann1.RJB6DE Arachis hypogaea HOM05D003087 ORTHO05D003312 8.8e-09 64.3 145 33.8
BolC3t14097H Brassica oleracea HOM05D003087 ORTHO05D003312 8.8e-09 64.3 143 29.4
BcaC01g06328 Brassica carinata HOM05D003087 ORTHO05D003312 1.1e-08 63.9 143 29.4
C03p16770 Brassica napus HOM05D003087 ORTHO05D003312 1.1e-08 63.9 143 29.4
BcaB02g08119 Brassica carinata HOM05D003087 ORTHO05D003312 2.5e-08 62.8 110 36.4
BcaC02g10284 Brassica carinata HOM05D003087 ORTHO05D003312 2.5e-08 62.8 106 34.9
C04p30780 Brassica napus HOM05D003087 ORTHO05D003312 2.5e-08 62.8 106 34.9
BolC4t24597H Brassica oleracea HOM05D003087 ORTHO05D003312 2.5e-08 62.8 106 34.9
C06p38890 Brassica napus HOM05D003087 ORTHO05D003312 3.3e-08 62.4 146 30.8
Medtr1g090907 Medicago truncatula HOM05D003087 ORTHO05D003312 3.3e-08 62.4 146 35.6
Psat6g174320 Pisum sativum HOM05D003087 ORTHO05D003312 3.3e-08 62.4 143 32.2
BolC6t38982H Brassica oleracea HOM05D003087 ORTHO05D003312 4.3e-08 62.0 146 30.8
A03p14390 Brassica napus HOM05D003087 ORTHO05D003312 7.4e-08 61.2 143 28.7
BraA03t10736Z Brassica rapa HOM05D003087 ORTHO05D003312 7.4e-08 61.2 143 28.7
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 7.4e-08 61.2 106 34.9
Thhalv10015307m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.7e-08 60.8 112 31.2
AT1G56400 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.3e-07 60.5 96 33.3
A06p35460 Brassica napus HOM05D003087 ORTHO05D003312 1.3e-07 60.5 113 33.6
BraA06t26469Z Brassica rapa HOM05D003087 ORTHO05D003312 1.3e-07 60.5 113 33.6
Thhalv10003202m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.3e-07 60.5 106 34.0
arahy.Tifrunner.gnm1.ann1.ELS2X1 Arachis hypogaea HOM05D003087 ORTHO05D003312 1.7e-07 60.1 145 33.1
AT3G29830 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 2.2e-07 59.7 145 29.0
A04p00690 Brassica napus HOM05D003087 ORTHO05D003312 2.2e-07 59.7 106 33.0
BraA04t15788Z Brassica rapa HOM05D003087 ORTHO05D003312 2.2e-07 59.7 106 33.0
AL1G66030 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 2.8e-07 59.3 96 32.3
RcHm_v2.0_Chr1g0363631 Rosa chinensis HOM05D003087 ORTHO05D003312 2.8e-07 59.3 145 30.3
Sp4g05500 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.8e-07 59.3 111 33.3
BcaC03g14738 Brassica carinata HOM05D003087 ORTHO05D003312 3.7e-07 58.9 96 33.3
C02p21890 Brassica napus HOM05D003087 ORTHO05D003312 3.7e-07 58.9 96 33.3
BolC2t08321H Brassica oleracea HOM05D003087 ORTHO05D003312 3.7e-07 58.9 96 33.3
Sp5g01160 Schrenkiella parvula HOM05D003087 ORTHO05D003312 3.7e-07 58.9 100 33.0
A02p13580 Brassica napus HOM05D003087 ORTHO05D003312 4.8e-07 58.5 96 33.3
BraA02t06416Z Brassica rapa HOM05D003087 ORTHO05D003312 4.8e-07 58.5 96 33.3
Sp6g16760 Schrenkiella parvula HOM05D003087 ORTHO05D003312 4.8e-07 58.5 96 32.3
Psat6g174360 Pisum sativum HOM05D003087 ORTHO05D003312 6.3e-07 58.2 145 29.7
Sp6g13710 Schrenkiella parvula HOM05D003087 ORTHO05D003312 6.3e-07 58.2 147 29.9
Carub.0005s0836 Capsella rubella HOM05D003087 ORTHO05D003312 8.2e-07 57.8 108 36.1
Thhalv10015513m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 8.2e-07 57.8 99 35.4
Carub.0004s0399 Capsella rubella HOM05D003087 ORTHO05D003312 1.1e-06 57.4 105 30.5
arahy.Tifrunner.gnm1.ann1.U37KZ8 Arachis hypogaea HOM05D003087 ORTHO05D003312 1.4e-06 57.0 145 32.4
AL8G30250 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.8e-06 56.6 93 32.3
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.8e-06 56.6 117 33.3
A07p32700 Brassica napus HOM05D003087 ORTHO05D003312 1.8e-06 56.6 96 32.3
BraA07t30896Z Brassica rapa HOM05D003087 ORTHO05D003312 1.8e-06 56.6 96 32.3
Carub.0004s0398 Capsella rubella HOM05D003087 ORTHO05D003312 2.4e-06 56.2 96 32.3
Sp4g04050 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.4e-06 56.2 97 36.1
FvH4_7g19741 Fragaria vesca HOM05D003087 ORTHO05D003312 3.1e-06 55.8 150 30.0
FAN03G1508 Fragaria x ananassa HOM05D003087 ORTHO05D003312 3.1e-06 55.8 137 30.7
Thhalv10015804m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 4.1e-06 55.5 98 32.7
FAN10G4237 Fragaria x ananassa HOM05D003087 ORTHO05D003312 4.1e-06 55.5 137 30.7
Glyma.09G102300 Glycine max HOM05D003087 ORTHO05D003312 4.1e-06 55.5 199 24.1
Glyma.08G312700 Glycine max HOM05D003087 ORTHO05D003312 5.3e-06 55.1 197 23.9
Manes.15G079900 Manihot esculenta HOM05D000576 ORTHO05D003312 5.3e-06 55.1 133 32.3
BcaB03g16179 Brassica carinata HOM05D003087 ORTHO05D003312 6.9e-06 54.7 112 34.8
FAN01G1579 Fragaria x ananassa HOM05D003087 ORTHO05D003312 6.9e-06 54.7 137 29.9
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 6.9e-06 54.7 147 29.3


User provided reference genes

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