Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.8e-64 247.7 124 100.0
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.9e-61 237.7 122 97.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.3e-57 224.9 122 91.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.7e-57 224.2 122 91.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.1e-55 219.9 122 86.9
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.1e-55 219.9 122 88.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.4e-55 218.8 122 86.9
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.1e-55 218.0 122 86.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.1e-55 218.0 122 85.2
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.2e-54 216.5 122 85.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.0e-54 215.7 122 87.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.6e-54 215.3 122 84.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.6e-54 215.3 122 87.7
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.4e-54 214.9 122 83.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.0e-53 213.4 122 85.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.0e-53 213.4 121 85.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.0e-53 213.4 122 86.1
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.3e-53 213.0 122 84.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.3e-53 213.0 122 85.2
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.3e-53 213.0 122 85.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.7e-53 212.6 123 82.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.2e-53 212.2 123 82.9
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.9e-53 211.8 122 83.6
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.8e-53 211.5 122 82.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 6.5e-53 210.7 122 82.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 8.4e-53 210.3 122 82.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.1e-52 209.9 122 82.8
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.1e-52 209.9 122 83.6
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.1e-52 209.9 122 80.3
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.4e-52 209.5 122 82.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 5.5e-52 207.6 122 81.1
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.6e-51 206.1 122 77.9
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.6e-51 206.1 122 79.5
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.1e-51 205.7 122 80.3
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.1e-51 205.7 122 82.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.6e-51 204.5 120 80.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 4.6e-51 204.5 122 81.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 4.6e-51 204.5 122 79.5
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.1e-51 204.1 122 81.1
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.0e-50 203.4 122 80.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.0e-50 203.4 122 80.3
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.0e-50 203.4 122 80.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.0e-50 203.4 122 80.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.0e-50 203.4 122 80.3
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.8e-50 202.6 122 79.5
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.0e-50 201.8 122 80.3
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.9e-50 201.4 122 77.0
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.9e-50 201.4 122 77.0
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.1e-50 201.1 122 79.5
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 5.1e-50 201.1 122 77.9
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.1e-49 199.9 122 76.2
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.1e-49 199.9 122 77.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-49 199.1 122 77.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.9e-49 199.1 122 77.9
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.9e-49 199.1 122 77.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.3e-49 198.4 122 75.4
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 4.3e-49 198.0 122 78.7
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.3e-49 198.0 122 77.9
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.7e-49 197.6 122 74.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 5.7e-49 197.6 122 76.2
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.7e-49 197.6 120 75.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.7e-49 197.6 121 76.0
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 7.4e-49 197.2 122 74.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 9.7e-49 196.8 122 77.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 9.7e-49 196.8 122 74.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.6e-48 196.1 122 76.2
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.6e-48 196.1 120 76.7
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.2e-48 195.7 122 76.2
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 2.2e-48 195.7 122 76.2
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.8e-48 195.3 120 76.7
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 3.7e-48 194.9 120 75.8
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.7e-48 194.9 121 75.2
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 4.8e-48 194.5 120 75.8
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 8.2e-48 193.7 120 76.7
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.1e-47 193.4 122 73.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.8e-47 192.6 120 75.0
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 6.9e-47 190.7 122 73.8
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.2e-46 189.9 122 72.1
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.6e-46 188.7 122 72.1
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 5.9e-46 187.6 122 74.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-44 182.6 122 69.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-44 182.6 122 69.7
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.2e-44 181.8 103 85.4
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.2e-43 179.9 121 66.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 6.7e-42 174.1 103 83.5
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 2.0e-41 172.6 103 80.6
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.5e-41 172.2 121 62.8
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-39 166.8 110 70.0
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 5.3e-39 164.5 127 70.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 9.1e-39 163.7 103 77.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 7.7e-38 160.6 102 77.5
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.2e-37 159.1 109 67.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.3e-32 143.3 108 61.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 2.8e-32 142.1 103 64.1
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.4e-31 139.0 101 67.3
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 9.1e-31 137.1 120 59.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 3.5e-30 135.2 77 84.4
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-30 134.8 109 56.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.9e-29 132.1 102 62.7
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 6.5e-29 131.0 76 82.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.4e-28 127.1 77 77.9
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 4.8e-24 114.8 85 65.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 6.3e-24 114.4 111 49.5
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.8e-23 112.8 101 52.5
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.1e-23 112.1 102 57.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.7e-22 109.0 76 67.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 7.7e-22 107.5 119 44.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.0e-18 97.1 123 39.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.4e-15 85.9 120 41.7
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.9e-13 79.0 49 71.4
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.1e-07 58.9 49 59.2


User provided reference genes

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