Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 4.9e-81 304.7 184 100.0
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 1.2e-47 193.7 181 67.4
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 1.8e-43 179.9 189 64.0
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 1.5e-42 176.8 177 62.1
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 5.3e-35 151.8 197 58.4
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 7.6e-34 147.9 172 59.9
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 3.8e-33 145.6 154 65.6
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 2.1e-31 139.8 172 55.8
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 7.9e-31 137.9 177 59.9
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.0e-30 137.5 144 60.4
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 3.3e-29 132.5 112 67.0
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 7.4e-29 131.3 178 54.5
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 4.8e-28 128.6 172 56.4
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 4.8e-28 128.6 112 64.3
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 6.3e-28 128.3 169 49.7
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.4e-27 127.1 175 48.0
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 1.4e-27 127.1 178 55.1
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.8e-27 126.7 177 54.2
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 2.4e-27 126.3 177 53.7
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 4.1e-27 125.6 128 55.5
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 9.0e-27 124.4 174 53.4
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.5e-26 123.6 167 55.7
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 1.5e-26 123.6 196 46.9
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.0e-26 123.2 168 50.0
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 2.0e-26 123.2 168 48.2
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 2.0e-26 123.2 168 48.8
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 5.9e-26 121.7 169 49.1
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 5.9e-26 121.7 165 56.4
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.0e-25 120.9 177 51.4
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 1.3e-25 120.6 114 59.6
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 1.7e-25 120.2 150 48.7
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 2.2e-25 119.8 156 50.6
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 6.5e-25 118.2 181 54.1
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 8.5e-25 117.9 110 69.1
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 1.1e-24 117.5 149 53.7
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.4e-24 117.1 175 57.1
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.4e-24 117.1 136 55.9
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 2.5e-24 116.3 169 49.1
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 2.5e-24 116.3 225 41.8
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 2.5e-24 116.3 156 61.5
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 4.2e-24 115.5 122 63.9
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 5.5e-24 115.2 171 58.5
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 9.4e-24 114.4 110 57.3
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.2e-23 114.0 170 58.2
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 1.2e-23 114.0 177 53.1
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.6e-23 113.6 144 59.7
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.6e-23 113.6 122 62.3
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 1.6e-23 113.6 139 49.6
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 2.1e-23 113.2 176 52.3
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 2.7e-23 112.8 142 56.3
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 2.7e-23 112.8 177 54.8
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.6e-23 112.5 126 57.1
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.6e-23 112.5 126 57.1
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 3.6e-23 112.5 178 50.0
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 4.6e-23 112.1 143 58.7
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 4.6e-23 112.1 120 56.7
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 7.9e-23 111.3 145 53.8
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 1.0e-22 110.9 161 59.6
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 1.0e-22 110.9 165 56.4
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 1.4e-22 110.5 178 44.4
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 1.4e-22 110.5 126 57.9
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.4e-22 110.5 123 64.2
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 1.8e-22 110.2 160 46.9
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.8e-22 110.2 119 58.8
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 3.0e-22 109.4 170 51.2
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 3.9e-22 109.0 176 51.1
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 6.7e-22 108.2 163 54.6
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 1.5e-21 107.1 110 67.3
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 2.0e-21 106.7 125 60.0
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 2.0e-21 106.7 170 54.1
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.0e-21 106.7 164 53.0
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 2.5e-21 106.3 126 60.3
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 2.5e-21 106.3 126 60.3
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 2.5e-21 106.3 126 56.3
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 3.3e-21 105.9 126 61.1
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 3.3e-21 105.9 144 48.6
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 3.3e-21 105.9 173 52.6
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 4.3e-21 105.5 126 57.9
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 4.3e-21 105.5 59 88.1
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 5.7e-21 105.1 160 51.2
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 9.7e-21 104.4 152 53.3
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 1.3e-20 104.0 146 53.4
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.7e-20 103.6 168 53.6
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 2.2e-20 103.2 145 51.7
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 2.8e-20 102.8 161 48.4
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 2.8e-20 102.8 161 52.8
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 3.7e-20 102.4 161 49.7
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 3.7e-20 102.4 183 50.3
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 4.8e-20 102.1 169 43.8
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 8.2e-20 101.3 161 50.3
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 8.2e-20 101.3 185 53.0
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 1.4e-19 100.5 145 49.7
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 1.4e-19 100.5 184 51.1
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 2.4e-19 99.8 56 85.7
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.2e-18 97.4 165 47.3
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 2.6e-18 96.3 167 53.9
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 5.9e-18 95.1 176 47.2
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.3e-17 94.0 145 46.2
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 2.2e-17 93.2 98 66.3
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 2.9e-17 92.8 131 59.5
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 6.5e-17 91.7 245 32.7
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 3.6e-15 85.9 194 37.1
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 6.1e-15 85.1 59 71.2
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 7.9e-15 84.7 185 45.9
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 5.1e-14 82.0 122 58.2
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 3.3e-13 79.3 129 47.3
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 3.3e-13 79.3 171 45.0
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 5.7e-13 78.6 128 53.9
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 1.3e-09 67.4 162 43.2
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 3.8e-09 65.9 36 77.8
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 5.0e-09 65.5 108 40.7
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 3.2e-08 62.8 154 32.5
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 5.5e-08 62.0 33 84.8
Actinidia18238 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.1e-07 60.1 51 70.6
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 5.2e-06 55.5 36 66.7


User provided reference genes

Program Settings