Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.5e-42 175.6 81 100.0
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 2.8e-20 101.7 51 92.2
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.1e-19 99.8 51 90.2
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 1.8e-19 99.0 52 86.5
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 3.1e-19 98.2 51 88.2
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 5.2e-19 97.4 52 84.6
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 6.8e-19 97.1 51 88.2
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 8.9e-19 96.7 51 88.2
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 8.9e-19 96.7 52 86.5
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 8.9e-19 96.7 51 86.3
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 1.2e-18 96.3 51 84.3
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.2e-18 96.3 51 86.3
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.5e-18 95.9 51 86.3
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.0e-18 95.5 51 82.4
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 2.0e-18 95.5 51 86.3
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 2.0e-18 95.5 52 84.6
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 2.6e-18 95.1 51 86.3
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.6e-18 95.1 51 84.3
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 2.6e-18 95.1 51 86.3
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 2.6e-18 95.1 51 86.3
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 82.4
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 86.3
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 86.3
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 84.3
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 84.3
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 3.4e-18 94.7 51 86.3
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 4.4e-18 94.4 51 84.3
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 4.4e-18 94.4 51 86.3
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 4.4e-18 94.4 51 84.3
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 5.8e-18 94.0 52 82.7
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.3e-17 92.8 51 82.4
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.3e-17 92.8 51 86.3
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 1.3e-17 92.8 51 82.4
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.3e-17 92.8 51 82.4
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.7e-17 92.4 51 82.4
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.7e-17 92.4 51 80.4
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.7e-17 92.4 51 80.4
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 1.7e-17 92.4 51 86.3
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 1.7e-17 92.4 51 80.4
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.2e-17 92.0 51 80.4
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 4.9e-17 90.9 51 78.4
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 4.9e-17 90.9 51 82.4
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 6.4e-17 90.5 51 78.4
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 8.3e-17 90.1 51 76.5
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 1.1e-16 89.7 51 80.4
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.9e-16 89.0 51 78.4
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 1.9e-16 89.0 51 80.4
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 3.2e-16 88.2 51 78.4
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 3.2e-16 88.2 51 76.5
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 4.1e-16 87.8 51 76.5
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 4.1e-16 87.8 51 76.5
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 4.1e-16 87.8 51 76.5
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 4.1e-16 87.8 55 78.2
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 7.0e-16 87.0 51 78.4
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.0e-16 87.0 51 72.5
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 7.0e-16 87.0 51 80.4
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 7.0e-16 87.0 51 80.4
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 7.0e-16 87.0 52 76.9
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 9.2e-16 86.7 52 80.8
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 9.2e-16 86.7 51 76.5
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.2e-15 86.3 51 74.5
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.2e-15 86.3 51 76.5
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.2e-15 86.3 51 74.5
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 1.2e-15 86.3 51 74.5
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.6e-15 85.9 51 74.5
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 2.0e-15 85.5 51 74.5
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.0e-15 85.5 51 78.4
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 2.0e-15 85.5 51 76.5
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.0e-15 85.5 51 76.5
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 80.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 3.5e-15 84.7 51 74.5
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 3.5e-15 84.7 50 76.0
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 7.8e-15 83.6 52 75.0
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 1.7e-14 82.4 51 72.5
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 1.7e-14 82.4 51 72.5
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.7e-14 82.4 50 74.0
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 3.0e-14 81.6 51 70.6
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 3.0e-14 81.6 50 70.0
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 3.0e-14 81.6 50 70.0
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 3.0e-14 81.6 50 70.0
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 5.0e-14 80.9 50 70.0
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 6.6e-14 80.5 50 72.0
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.5e-13 78.6 51 72.5
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 4.3e-13 77.8 50 68.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 4.3e-13 77.8 51 70.6
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 9.5e-13 76.6 51 74.5
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.4e-11 72.8 51 62.7
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.4e-11 72.8 51 62.7
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.2e-10 69.7 94 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 3.7e-09 64.7 58 53.4
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 5.4e-08 60.8 52 53.8
CSS0009667 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.2e-07 59.7 29 93.1
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 2.3e-06 55.5 49 49.0
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 6.6e-06 53.9 51 39.2


User provided reference genes

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