Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 7.9e-97 357.1 176 100.0
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.2e-63 246.9 129 94.6
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 3.1e-48 195.7 133 78.9
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 4.6e-44 181.8 140 70.0
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 4.9e-38 161.8 139 64.7
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 9.2e-29 131.0 100 75.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.4e-24 117.1 99 64.6
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.9e-22 109.4 108 57.4
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 6.4e-22 108.2 99 63.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 9.3e-21 104.4 102 55.9
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.7e-20 102.8 88 60.2
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.6e-20 102.1 105 57.1
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.3e-19 100.5 126 51.6
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.0e-19 99.4 99 56.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.9e-19 99.0 102 52.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.9e-19 99.0 99 57.6
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 5.1e-19 98.6 124 51.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.1e-18 97.4 99 54.5
Hma1.2p1_0356F.1_g134010 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.5e-18 97.1 103 56.3
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.9e-18 96.7 97 57.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.5e-18 96.3 99 54.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 3.3e-18 95.9 99 54.5
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.3e-18 95.5 99 54.5
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.6e-18 95.1 97 54.6
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 7.3e-18 94.7 93 51.6
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.3e-17 94.0 100 52.0
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.3e-17 94.0 93 54.8
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.3e-17 94.0 99 53.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.6e-17 93.6 90 53.3
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.1e-17 93.2 95 54.7
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.1e-17 93.2 100 52.0
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.1e-17 93.2 100 52.0
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 4.8e-17 92.0 90 55.6
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.2e-17 91.7 90 53.3
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 6.2e-17 91.7 91 52.7
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 8.1e-17 91.3 97 53.6
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.1e-16 90.9 91 51.6
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.1e-16 90.9 100 49.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.4e-16 90.5 99 52.5
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.4e-16 89.7 93 52.7
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 3.1e-16 89.4 91 50.5
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.0e-16 89.0 125 40.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 6.9e-16 88.2 163 36.8
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 9.0e-16 87.8 99 54.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 9.0e-16 87.8 90 50.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 9.0e-16 87.8 90 50.0
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.5e-15 87.0 98 48.0
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.6e-15 86.3 124 41.1
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.6e-15 86.3 102 48.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 2.6e-15 86.3 102 48.0
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.4e-15 85.9 99 50.5
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 3.4e-15 85.9 99 51.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.5e-15 85.5 99 53.5
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 5.8e-15 85.1 102 50.0
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 5.8e-15 85.1 102 50.0
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 9.9e-15 84.3 97 49.5
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.7e-14 83.6 99 49.5
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.7e-14 83.6 98 44.9
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.7e-14 83.6 99 50.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 2.9e-14 82.8 93 49.5
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-14 82.8 136 39.7
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 3.8e-14 82.4 102 45.1
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 6.4e-14 81.6 102 48.0
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 6.4e-14 81.6 102 48.0
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 8.4e-14 81.3 136 39.0
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 8.4e-14 81.3 96 43.8
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.1e-13 80.9 99 46.5
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.4e-13 80.5 123 43.1
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.4e-13 80.5 98 49.0
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.4e-13 79.7 99 45.5
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 2.4e-13 79.7 125 40.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.2e-13 79.0 99 48.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 4.2e-13 79.0 93 50.5
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 4.2e-13 79.0 94 48.9
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 5.4e-13 78.6 102 45.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 7.1e-13 78.2 126 41.3
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 9.3e-13 77.8 99 47.5
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.2e-12 77.4 123 36.6
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.6e-12 77.0 93 44.1
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.1e-12 76.6 90 46.7
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 2.1e-12 76.6 90 46.7
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.7e-12 76.3 102 49.0
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 2.7e-12 76.3 103 44.7
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.7e-12 76.3 90 51.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.7e-12 76.3 99 51.5
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.5e-12 75.9 111 43.2
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.5e-12 75.9 123 39.0
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 3.5e-12 75.9 102 43.1
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 3.5e-12 75.9 99 43.4
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.6e-12 75.5 100 42.0
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.6e-12 75.5 90 46.7
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 4.6e-12 75.5 86 46.5
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 4.6e-12 75.5 100 44.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 6.0e-12 75.1 99 48.5
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.0e-12 75.1 102 43.1
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 6.0e-12 75.1 100 43.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 6.0e-12 75.1 102 46.1
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.0e-11 74.3 98 48.0
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 1.0e-11 74.3 97 42.3
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.8e-11 73.6 74 52.7
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.3e-11 73.2 99 47.5
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 3.0e-11 72.8 99 46.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.0e-11 72.8 111 42.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.9e-11 72.4 93 48.4
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.9e-11 72.4 123 38.2
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 5.1e-11 72.0 101 46.5
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 5.1e-11 72.0 100 50.0
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 5.1e-11 72.0 101 46.5
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.1e-11 72.0 99 50.5
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.1e-11 72.0 99 50.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.1e-11 72.0 99 50.5
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.1e-11 72.0 99 50.5
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 6.7e-11 71.6 99 47.5
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 6.7e-11 71.6 111 42.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 6.7e-11 71.6 99 47.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 6.7e-11 71.6 99 50.5
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.7e-11 71.6 111 41.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.7e-11 71.6 94 45.7
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.7e-11 71.2 88 47.7
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-10 70.9 99 47.5
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-10 70.9 99 47.5
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.5e-10 69.7 99 46.5
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 2.5e-10 69.7 80 50.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.3e-10 68.9 90 47.8
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.3e-10 68.9 102 41.2
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 7.4e-10 68.2 99 39.4
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 7.4e-10 68.2 88 46.6
Psat3g070400 Pisum sativum HOM05D002352 ORTHO05D015016 2.8e-09 66.2 83 45.8
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 9.0e-08 61.2 136 33.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 9.0e-08 61.2 90 38.9
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.0e-07 60.1 106 36.8
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 4.5e-07 58.9 89 44.9
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 7.6e-07 58.2 106 37.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.2e-06 56.6 99 37.4
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 2.9e-06 56.2 71 49.3
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.9e-06 56.2 93 40.9
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 2.9e-06 56.2 144 31.2
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.9e-06 56.2 106 36.8
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 4.9e-06 55.5 78 50.0
CSS0047837 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 6.4e-06 55.1 27 96.3


User provided reference genes

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