Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.2e-82 309.7 149 100.0
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.3e-28 130.2 137 53.3
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 2.4e-25 119.4 137 51.8
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.4e-25 119.4 137 47.4
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 8.4e-23 110.9 137 46.0
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 1.9e-22 109.8 137 46.0
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 3.2e-22 109.0 137 46.0
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.2e-21 107.1 137 45.3
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.2e-21 107.1 137 45.3
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.2e-21 107.1 137 44.5
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.6e-21 106.7 137 44.5
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.6e-21 106.7 137 44.5
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.6e-21 106.7 137 44.5
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 1.6e-21 106.7 137 44.5
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.6e-21 106.7 137 46.0
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 2.7e-21 105.9 137 44.5
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 2.7e-21 105.9 137 45.3
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 3.5e-21 105.5 137 44.5
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 6.0e-21 104.8 137 44.5
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 7.8e-21 104.4 137 43.8
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.0e-20 104.0 137 43.1
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.0e-20 104.0 137 43.8
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.0e-20 104.0 137 43.1
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.0e-20 104.0 137 43.1
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 1.7e-20 103.2 137 43.8
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.7e-20 103.2 137 43.8
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.7e-20 103.2 137 44.5
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.7e-20 103.2 137 43.1
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.3e-20 102.8 137 43.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 2.3e-20 102.8 137 43.1
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 2.3e-20 102.8 137 44.5
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 3.0e-20 102.4 137 43.1
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.0e-20 102.4 137 43.1
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 3.9e-20 102.1 137 42.3
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 5.1e-20 101.7 137 43.1
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 5.1e-20 101.7 137 43.1
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 6.6e-20 101.3 137 41.6
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 8.7e-20 100.9 137 43.8
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 8.7e-20 100.9 137 43.8
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 8.7e-20 100.9 137 43.8
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 8.7e-20 100.9 137 43.8
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 8.7e-20 100.9 137 43.8
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 8.7e-20 100.9 137 43.8
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.1e-19 100.5 137 42.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 1.1e-19 100.5 137 42.3
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 1.1e-19 100.5 137 42.3
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.5e-19 100.1 137 43.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.5e-19 100.1 137 42.3
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.5e-19 100.1 137 42.3
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.9e-19 99.8 137 43.1
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 2.5e-19 99.4 137 41.6
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 2.5e-19 99.4 137 42.3
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 2.5e-19 99.4 137 41.6
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.3e-19 99.0 137 43.1
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 5.6e-19 98.2 137 41.6
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 5.6e-19 98.2 137 44.5
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 7.3e-19 97.8 137 40.9
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 7.3e-19 97.8 137 43.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 9.6e-19 97.4 137 40.1
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.3e-18 97.1 137 41.6
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.3e-18 97.1 143 40.6
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.6e-18 96.7 137 40.1
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 2.1e-18 96.3 137 42.3
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 2.8e-18 95.9 137 41.6
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.8e-18 95.9 137 42.3
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 3.6e-18 95.5 141 39.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 4.8e-18 95.1 137 42.3
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 4.8e-18 95.1 137 40.1
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 1.1e-17 94.0 137 40.1
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.1e-17 94.0 137 42.3
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.8e-17 93.2 137 40.9
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 2.4e-17 92.8 141 39.0
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 3.1e-17 92.4 137 40.1
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 3.1e-17 92.4 137 40.9
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 4.0e-17 92.0 137 40.1
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 4.0e-17 92.0 137 39.4
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 4.0e-17 92.0 137 39.4
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 9.0e-17 90.9 137 40.9
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.2e-16 90.5 137 40.1
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 4.5e-16 88.6 147 38.8
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.3e-15 87.0 137 40.9
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 1.3e-15 87.0 137 38.0
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 1.7e-15 86.7 136 36.8
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.7e-15 86.7 137 36.5
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 36.8
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 36.8
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 36.8
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 36.8
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 36.8
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 8.4e-15 84.3 136 38.2
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.1e-14 84.0 137 38.7
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.4e-14 83.6 136 36.0
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 2.4e-14 82.8 136 36.0
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.4e-14 82.8 136 36.0
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 2.4e-14 82.8 136 36.0
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 2.4e-14 82.8 136 36.0
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 5.4e-14 81.6 136 35.3
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 5.4e-14 81.6 136 35.3
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 7.1e-14 81.3 136 35.3
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.6e-13 80.1 132 35.6
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 2.7e-13 79.3 136 34.6
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 2.7e-13 79.3 136 34.6
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 2.7e-13 79.3 136 34.6
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 3.9e-12 75.5 137 35.0
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 2.1e-10 69.7 36 80.6
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 2.1e-10 69.7 36 80.6
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 3.1e-09 65.9 37 83.8
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.5e-08 63.5 39 76.9
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 1.5e-08 63.5 132 29.5
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 5.8e-08 61.6 137 29.9
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.7e-07 60.1 37 73.0
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 3.2e-06 55.8 41 63.4


User provided reference genes

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