Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.8e-67 257.7 129 100.0
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 8.8e-61 236.9 129 92.2
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.6e-49 199.5 148 70.9
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.9e-47 192.6 148 68.2
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.5e-47 192.2 149 69.1
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 2.7e-46 188.7 139 68.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 6.1e-46 187.6 143 68.5
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 8.0e-46 187.2 144 70.1
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 2.3e-45 185.7 142 69.7
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 5.2e-45 184.5 144 69.4
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 6.7e-45 184.1 142 69.0
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.0e-44 182.6 143 67.1
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 3.3e-44 181.8 144 67.4
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 3.3e-44 181.8 139 69.1
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 7.5e-44 180.6 142 66.9
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 9.7e-44 180.3 136 67.6
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.3e-43 179.9 143 65.7
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.7e-43 179.5 144 67.4
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 2.2e-43 179.1 142 65.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 2.8e-43 178.7 142 66.2
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 2.8e-43 178.7 142 66.2
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.8e-43 178.7 142 66.2
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 2.8e-43 178.7 144 67.4
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.8e-43 178.7 143 65.7
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 2.8e-43 178.7 142 66.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 4.8e-43 177.9 143 66.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.3e-43 177.6 130 69.2
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.3e-43 177.6 143 66.4
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 8.2e-43 177.2 142 67.6
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-42 176.8 143 65.7
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.1e-42 176.8 138 68.1
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.4e-42 176.4 143 65.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.4e-42 176.4 144 66.7
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.4e-42 176.4 142 66.2
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 3.1e-42 175.3 142 68.3
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 3.1e-42 175.3 142 66.9
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.1e-42 175.3 148 64.2
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 4.1e-42 174.9 144 66.0
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.3e-42 174.5 141 65.2
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 5.3e-42 174.5 139 66.2
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 9.1e-42 173.7 142 66.9
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.1e-42 173.7 142 66.9
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.1e-42 173.7 142 66.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.2e-41 173.3 144 66.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.2e-41 173.3 137 66.4
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.6e-41 172.9 142 65.5
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.6e-41 172.9 146 64.4
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.0e-41 172.6 138 63.8
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 2.0e-41 172.6 140 65.7
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 2.0e-41 172.6 144 66.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.7e-41 172.2 143 65.0
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.7e-41 172.2 144 63.9
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.7e-41 172.2 148 63.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.7e-41 172.2 129 70.5
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 3.5e-41 171.8 138 65.2
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.5e-41 171.4 142 62.7
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.5e-41 171.4 142 62.7
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.5e-41 171.4 145 64.8
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.5e-41 171.4 136 68.4
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 4.5e-41 171.4 143 63.6
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 4.5e-41 171.4 144 63.2
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.9e-41 171.0 145 64.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 5.9e-41 171.0 143 67.1
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 7.7e-41 170.6 143 63.6
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 7.7e-41 170.6 144 63.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-40 170.2 138 63.8
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.0e-40 170.2 141 66.7
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.3e-40 169.9 142 65.5
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.3e-40 169.9 143 62.9
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.7e-40 169.5 150 62.0
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.9e-40 168.7 143 64.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.9e-40 168.7 143 62.9
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 2.9e-40 168.7 141 64.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.8e-40 168.3 142 65.5
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 6.5e-40 167.5 129 65.9
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 8.5e-40 167.2 149 63.1
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.1e-39 166.8 150 60.7
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.1e-39 166.8 143 62.2
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.5e-39 166.4 144 61.8
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.5e-39 166.4 142 64.1
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.5e-39 166.4 144 63.2
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.9e-39 166.0 145 60.0
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.9e-39 166.0 128 68.8
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.5e-39 165.6 147 60.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.5e-39 164.5 144 62.5
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 9.4e-39 163.7 143 62.2
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 9.4e-39 163.7 140 60.7
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.2e-38 163.3 144 61.1
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-38 163.3 145 62.1
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.6e-38 162.9 146 62.3
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.1e-38 162.5 144 61.1
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 3.6e-38 161.8 147 62.6
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 4.7e-38 161.4 147 59.2
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 4.7e-38 161.4 141 62.4
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 6.1e-38 161.0 145 62.8
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 8.0e-38 160.6 143 62.2
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.0e-37 160.2 142 63.4
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.0e-37 160.2 141 60.3
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.3e-37 159.1 134 61.2
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 4.0e-37 158.3 142 62.0
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 6.8e-37 157.5 147 58.5
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.5e-36 156.4 152 59.2
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 2.6e-36 155.6 146 61.0
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 4.4e-36 154.8 148 60.1
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.7e-35 152.9 140 57.9
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 2.2e-35 152.5 148 59.5
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 4.8e-35 151.4 144 58.3
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 9.1e-34 147.1 138 58.0
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 5.9e-33 144.4 172 51.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 2.3e-32 142.5 141 58.9
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 7.2e-31 137.5 150 55.3
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.0e-29 133.7 88 75.0
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 4.0e-29 131.7 145 53.8
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 4.0e-29 131.7 86 73.3
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.2e-28 130.2 198 45.5
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.9e-25 117.9 143 46.9
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.7e-24 116.3 143 50.3
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.8e-24 115.2 145 46.2
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.3e-23 112.1 137 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 4.7e-22 108.2 139 46.0
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 4.4e-20 101.7 117 53.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 8.9e-13 77.4 87 47.1
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 3.2e-10 68.9 39 84.6
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.2e-09 67.0 80 45.0
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 4.6e-09 65.1 189 29.6
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.6e-09 65.1 189 29.6


User provided reference genes

Program Settings