Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040426 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D113037 9.1e-71 270.0 125 100.0
CSS0014514 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000997 1.6e-11 73.2 34 97.1
Rhsim07G0219200 Rhododendron simsii HOM05D000129 ORTHO05D000997 4.0e-10 68.6 34 88.2
TAR381G0044 Trochodendron aralioides HOM05D000129 ORTHO05D000997 4.0e-10 68.6 34 88.2
vmacro22048 Vaccinium macrocarpon HOM05D000129 ORTHO05D000997 4.0e-10 68.6 34 88.2
Dinv44942 Davidia involucrata HOM05D000129 ORTHO05D000997 5.2e-10 68.2 34 88.2
Lj4C73G4 Lonicera japonica HOM05D000129 ORTHO05D000997 5.2e-10 68.2 34 88.2
Actinidia19583 Actinidia chinensis HOM05D000129 ORTHO05D000997 6.8e-10 67.8 34 91.2
Hma1.2p1_1170F.1_g263330 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 6.8e-10 67.8 54 61.1
Hma1.2p1_1170F.1_g263340 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 6.8e-10 67.8 54 61.1
Gohir.D05G214200 Gossypium hirsutum HOM05D000129 ORTHO05D000997 8.9e-10 67.4 34 88.2
Gorai.009G220900 Gossypium raimondii HOM05D000129 ORTHO05D000997 8.9e-10 67.4 34 88.2
Sc15g0005610 Simmondsia chinensis HOM05D000129 ORTHO05D000997 1.5e-09 66.6 34 82.4
Sopen07g012030 Solanum pennellii HOM05D000129 ORTHO05D000997 2.0e-09 66.2 34 85.3
Eucgr.F02237 Eucalyptus grandis HOM05D000129 ORTHO05D000997 2.6e-09 65.9 34 82.4
HanXRQChr12g0368611 Helianthus annuus HOM05D000129 ORTHO05D000997 2.6e-09 65.9 34 82.4
SGA_v2.0_scaffold152G36819 Striga asiatica HOM05D000129 ORTHO05D000997 2.6e-09 65.9 34 82.4
Gohir.A05G210900 Gossypium hirsutum HOM05D000129 ORTHO05D000997 3.4e-09 65.5 34 85.3
PSO541G1994 Papaver somniferum HOM05D000129 ORTHO05D000997 3.4e-09 65.5 51 62.7
SalBow2G1224 Salvia bowleyana HOM05D000129 ORTHO05D000997 3.4e-09 65.5 34 82.4
Actinidia38111 Actinidia chinensis HOM05D026250 ORTHO05D026319 4.4e-09 65.1 34 85.3
PSO675G3743 Papaver somniferum HOM05D000129 ORTHO05D000997 4.4e-09 65.1 34 82.4
CAN.G674.46 Capsicum annuum HOM05D000129 ORTHO05D000997 5.8e-09 64.7 34 82.4
CiPaw.07G173500 Carya illinoinensis HOM05D000129 ORTHO05D000997 5.8e-09 64.7 34 82.4
ECA232G0094 Erigeron canadensis HOM05D000129 ORTHO05D000997 5.8e-09 64.7 51 62.7
Manes.18G047600 Manihot esculenta HOM05D000129 ORTHO05D000997 7.5e-09 64.3 34 79.4
PGR031G0208 Punica granatum HOM05D000129 ORTHO05D000997 7.5e-09 64.3 34 76.5
Peaxi162Scf00551g00068 Petunia axillaris HOM05D000129 ORTHO05D000997 9.9e-09 63.9 34 82.4
Atru.chr13.850 Acer truncatum HOM05D000129 ORTHO05D000997 1.3e-08 63.5 40 70.0
EL10Ac8g19856 Beta vulgaris HOM05D000129 ORTHO05D000997 1.7e-08 63.2 34 76.5
AUR62036019 Chenopodium quinoa HOM05D000129 ORTHO05D000997 1.7e-08 63.2 34 76.5
Duzib093G1703 Durio zibethinus HOM05D000129 ORTHO05D000997 1.7e-08 63.2 34 82.4
Ah.11g039370 Amaranthus hybridus HOM05D000129 ORTHO05D000997 2.2e-08 62.8 34 76.5
arahy.Tifrunner.gnm1.ann1.2ZDN53 Arachis hypogaea HOM05D000129 ORTHO05D000997 2.2e-08 62.8 34 79.4
arahy.Tifrunner.gnm1.ann1.NRZN5K Arachis hypogaea HOM05D000129 ORTHO05D000997 2.2e-08 62.8 34 79.4
Cfa013761 Carpinus fangiana HOM05D000129 ORTHO05D000997 2.9e-08 62.4 34 82.4
Nn5g30632 Nelumbo nucifera HOM05D000129 ORTHO05D000997 2.9e-08 62.4 40 72.5
Potri.002G117400 Populus trichocarpa HOM05D000129 ORTHO05D000997 2.9e-08 62.4 34 76.5
Hund02410 Selenicereus undatus HOM05D000129 ORTHO05D000997 2.9e-08 62.4 34 76.5
Thecc.08G086700 Theobroma cacao HOM05D000129 ORTHO05D000997 2.9e-08 62.4 34 82.4
AUR62037950 Chenopodium quinoa HOM05D000129 ORTHO05D000997 3.7e-08 62.0 34 73.5
Lsat_1_v5_gn_9_76580 Lactuca sativa HOM05D000129 ORTHO05D000997 3.7e-08 62.0 34 76.5
Oeu053077.1 Olea europaea HOM05D000129 ORTHO05D000997 3.7e-08 62.0 34 79.4
QL12p038296 Quercus lobata HOM05D000129 ORTHO05D000997 3.7e-08 62.0 34 79.4
CANSAT11G2151 Cannabis sativa HOM05D000129 ORTHO05D000997 4.9e-08 61.6 34 73.5
Psat5g037840 Pisum sativum HOM05D000129 ORTHO05D000997 4.9e-08 61.6 34 82.4
Aqoxy6G02557 Aquilegia oxysepala HOM05D000129 ORTHO05D000997 6.4e-08 61.2 34 73.5
Potri.014G014700 Populus trichocarpa HOM05D000129 ORTHO05D000997 6.4e-08 61.2 34 73.5
Sabra14G0008800 Salix brachista HOM05D000129 ORTHO05D000997 6.4e-08 61.2 34 73.5
DCAR_027593 Daucus carota HOM05D000129 ORTHO05D000997 8.3e-08 60.8 34 73.5
Lj1g0005699 Lotus japonicus HOM05D000129 ORTHO05D000997 8.3e-08 60.8 40 75.0
GSVIVG01009320001 Vitis vinifera HOM05D000129 ORTHO05D000997 1.1e-07 60.5 32 81.2
ATR0739G155 Amborella trichopoda HOM05D000129 ORTHO05D000997 1.4e-07 60.1 40 67.5
Ciclev10000142m.g Citrus clementina HOM05D000129 ORTHO05D000997 1.4e-07 60.1 34 73.5
MD08G1080200 Malus domestica HOM05D000129 ORTHO05D000997 1.4e-07 60.1 54 57.4
Ca_15897_v3 Cicer arietinum L. HOM05D000129 ORTHO05D000997 1.9e-07 59.7 34 79.4
Migut.N02792 Erythranthe guttata HOM05D000129 ORTHO05D000997 1.9e-07 59.7 34 76.5
Medtr3g103270 Medicago truncatula HOM05D000129 ORTHO05D000997 1.9e-07 59.7 34 79.4
Prupe.1G421100 Prunus persica HOM05D000129 ORTHO05D000997 1.9e-07 59.7 54 57.4
Cpa.g.sc142.46 Carica papaya HOM05D000129 ORTHO05D000997 2.4e-07 59.3 54 51.9
COL.COLO4_28481 Corchorus olitorius HOM05D000129 ORTHO05D000997 2.4e-07 59.3 34 76.5
Os03g0730800 Oryza sativa ssp. japonica HOM05D000129 ORTHO05D000997 2.4e-07 59.3 40 67.5
Phvul.009G072800 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 2.4e-07 59.3 34 79.4
VMungo1309G1806 Vigna mungo HOM05D000129 ORTHO05D000997 2.4e-07 59.3 34 79.4
Carub.0001s0954 Capsella rubella HOM05D000129 ORTHO05D000997 3.2e-07 58.9 39 61.5
CARHR010230 Cardamine hirsuta HOM05D000129 ORTHO05D000997 3.2e-07 58.9 39 61.5
Glyma.04G046700 Glycine max HOM05D000129 ORTHO05D000997 3.2e-07 58.9 53 60.4
Cc10_g05070 Coffea canephora HOM05D000129 ORTHO05D000997 4.1e-07 58.5 34 73.5
Lalb_Chr23g0267561 Lupinus albus HOM05D000129 ORTHO05D000997 4.1e-07 58.5 47 63.8
SEGI_00929 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 4.1e-07 58.5 40 70.0
AL1G20820 Arabidopsis lyrata HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
A06p06780 Brassica napus HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
C05p08260 Brassica napus HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
BraA06t23893Z Brassica rapa HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
Thhalv10006682m.g Eutrema salsugineum HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
Sp1g08760 Schrenkiella parvula HOM05D000129 ORTHO05D000997 5.4e-07 58.2 39 61.5
THA.LOC104816765 Tarenaya hassleriana HOM05D000129 ORTHO05D000997 5.4e-07 58.2 40 67.5
AT1G10130 Arabidopsis thaliana HOM05D000129 ORTHO05D000997 9.2e-07 57.4 39 61.5
BcaC07g41841 Brassica carinata HOM05D000129 ORTHO05D000997 1.6e-06 56.6 39 59.0
C08p49110 Brassica napus HOM05D000129 ORTHO05D000997 1.6e-06 56.6 39 59.0
BolC8t52446H Brassica oleracea HOM05D000129 ORTHO05D000997 1.6e-06 56.6 39 59.0
MD15G1067300 Malus domestica HOM05D000129 ORTHO05D000997 1.6e-06 56.6 54 51.9
BcaC05g24810 Brassica carinata HOM05D000129 ORTHO05D000997 2.1e-06 56.2 38 60.5
A09p65190 Brassica napus HOM05D000129 ORTHO05D000997 2.1e-06 56.2 39 61.5
BolC5t29577H Brassica oleracea HOM05D000129 ORTHO05D000997 2.1e-06 56.2 38 60.5
FvH4_2g32870 Fragaria vesca HOM05D000129 ORTHO05D000997 2.1e-06 56.2 34 73.5
FAN15G0647 Fragaria x ananassa HOM05D000129 ORTHO05D000997 2.1e-06 56.2 34 73.5
FAN24G2434 Fragaria x ananassa HOM05D000129 ORTHO05D000997 2.1e-06 56.2 34 73.5
FAN27G3321 Fragaria x ananassa HOM05D000129 ORTHO05D000997 2.1e-06 56.2 34 73.5
RcHm_v2.0_Chr6g0309841 Rosa chinensis HOM05D000129 ORTHO05D000997 2.1e-06 56.2 34 73.5
BraA09t41862Z Brassica rapa HOM05D000129 ORTHO05D000997 2.7e-06 55.8 39 59.0
CsaV3_2G026010 Cucumis sativus L. HOM05D000129 ORTHO05D000997 3.5e-06 55.5 51 51.0
CDE01G0303 Ceratophyllum demersum HOM05D000129 ORTHO05D000997 4.6e-06 55.1 34 70.6


User provided reference genes

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