Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.2e-36 154.5 73 100.0
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.7e-14 81.6 40 92.5
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.9e-14 80.5 39 94.9
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.7e-13 79.0 71 62.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.5e-12 75.9 57 64.9
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.5e-12 75.9 39 84.6
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 2.5e-12 75.1 62 58.1
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 9.5e-12 73.2 60 60.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.2e-11 72.8 40 82.5
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 1.6e-11 72.4 53 64.2
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.6e-11 72.4 40 80.0
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.1e-11 72.0 39 82.1
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 2.8e-11 71.6 39 79.5
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 2.8e-11 71.6 39 76.9
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.8e-11 71.6 39 82.1
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 3.6e-11 71.2 39 82.1
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 3.6e-11 71.2 39 82.1
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 3.6e-11 71.2 39 82.1
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 3.6e-11 71.2 39 82.1
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 3.6e-11 71.2 39 82.1
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 4.7e-11 70.9 39 79.5
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 4.7e-11 70.9 39 79.5
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.7e-11 70.9 39 79.5
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 6.1e-11 70.5 40 75.0
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 6.1e-11 70.5 39 82.1
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 6.1e-11 70.5 39 79.5
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 8.0e-11 70.1 39 79.5
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 8.0e-11 70.1 39 76.9
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 1.0e-10 69.7 40 75.0
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.0e-10 69.7 39 76.9
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.0e-10 69.7 52 61.5
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.0e-10 69.7 38 78.9
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.0e-10 69.7 38 78.9
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.0e-10 69.7 39 79.5
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.0e-10 69.7 39 76.9
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.0e-10 69.7 39 76.9
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.0e-10 69.7 39 79.5
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 79.5
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 79.5
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 76.9
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 76.9
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 76.9
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.4e-10 69.3 39 79.5
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.8e-10 68.9 39 79.5
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.8e-10 68.9 39 74.4
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.8e-10 68.9 39 74.4
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 2.3e-10 68.6 39 76.9
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 3.1e-10 68.2 39 76.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 3.1e-10 68.2 39 79.5
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.1e-10 68.2 39 74.4
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 3.1e-10 68.2 39 76.9
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 4.0e-10 67.8 39 76.9
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 4.0e-10 67.8 39 74.4
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.0e-10 67.8 39 76.9
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 5.2e-10 67.4 39 74.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 5.2e-10 67.4 39 76.9
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 5.2e-10 67.4 39 76.9
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 6.8e-10 67.0 53 58.5
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 6.8e-10 67.0 39 74.4
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 6.8e-10 67.0 41 70.7
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 6.8e-10 67.0 39 74.4
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 6.8e-10 67.0 39 74.4
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 8.9e-10 66.6 39 74.4
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 8.9e-10 66.6 39 71.8
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 8.9e-10 66.6 39 71.8
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.2e-09 66.2 39 76.9
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 1.2e-09 66.2 39 71.8
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.5e-09 65.9 39 74.4
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 2.0e-09 65.5 39 74.4
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-09 65.5 48 62.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 2.0e-09 65.5 39 74.4
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 2.0e-09 65.5 41 68.3
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-09 65.1 45 64.4
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-09 65.1 39 71.8
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-09 65.1 39 71.8
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 2.6e-09 65.1 39 69.2
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 2.6e-09 65.1 39 71.8
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 3.4e-09 64.7 39 74.4
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.4e-09 64.7 39 71.8
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.4e-09 64.7 40 70.0
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 3.4e-09 64.7 39 71.8
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 3.4e-09 64.7 39 74.4
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.4e-09 64.3 38 73.7
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 4.4e-09 64.3 40 70.0
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 4.4e-09 64.3 40 70.0
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.4e-09 64.3 39 71.8
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 5.8e-09 63.9 43 65.1
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.8e-09 63.9 37 75.7
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 9.8e-09 63.2 39 69.2
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 9.8e-09 63.2 40 67.5
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 9.8e-09 63.2 40 70.0
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-08 62.8 37 73.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.3e-08 62.8 39 69.2
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.3e-08 62.8 39 69.2
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.7e-08 62.4 62 50.0
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 1.7e-08 62.4 39 69.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.7e-08 62.4 39 69.2
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 2.9e-08 61.6 39 66.7
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.9e-08 61.6 39 66.7
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.9e-08 61.6 39 66.7
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-08 61.2 37 70.3
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-08 61.2 37 70.3
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-08 61.2 37 70.3
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 4.9e-08 60.8 42 64.3
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 4.9e-08 60.8 40 67.5
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.9e-08 60.8 43 60.5
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 6.4e-08 60.5 36 72.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 6.4e-08 60.5 39 66.7
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 6.4e-08 60.5 39 66.7
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 6.4e-08 60.5 39 66.7
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 8.3e-08 60.1 39 64.1
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 8.3e-08 60.1 39 66.7
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 8.3e-08 60.1 38 63.2
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.1e-07 59.7 39 64.1
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.4e-07 59.3 39 64.1
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.9e-07 58.9 36 72.2
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.9e-07 58.9 39 66.7
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.9e-07 58.9 39 61.5
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 3.2e-07 58.2 39 66.7
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 3.2e-07 58.2 40 62.5
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 5.4e-07 57.4 55 47.3
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.0e-07 57.0 44 54.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.6e-06 55.8 39 61.5
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.0e-06 55.5 39 61.5
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.7e-06 55.1 40 57.5
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 3.5e-06 54.7 38 65.8
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 3.5e-06 54.7 38 55.3


User provided reference genes

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