Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040402 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D112689 7.4e-65 250.4 124 100.0
CSS0013923 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109872 1.8e-55 219.2 133 85.0
CSS0029480 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D110723 3.0e-26 122.1 123 61.8
CSS0004560 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109985 5.3e-23 111.3 91 72.5
Ciclev10024926m.g Citrus clementina HOM05D001549 ORTHO05D003098 5.7e-17 91.3 45 91.1
CSS0023079 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 7.5e-17 90.9 43 97.7
Lj4C136G10 Lonicera japonica HOM05D001549 ORTHO05D003098 1.3e-16 90.1 89 58.4
GSVIVG01005084001 Vitis vinifera HOM05D001549 ORTHO05D003098 2.2e-16 89.4 45 88.9
CiPaw.01G027000 Carya illinoinensis HOM05D001549 ORTHO05D003098 4.8e-16 88.2 43 93.0
Dinv39910 Davidia involucrata HOM05D001549 ORTHO05D003098 4.8e-16 88.2 45 91.1
Rhsim10G0125500 Rhododendron simsii HOM05D001549 ORTHO05D003098 4.8e-16 88.2 45 88.9
vmacro08940 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 6.3e-16 87.8 43 90.7
MD15G1274800 Malus domestica HOM05D001549 ORTHO05D003098 1.1e-15 87.0 45 88.9
CANSAT01G2865 Cannabis sativa HOM05D001549 ORTHO05D003098 1.4e-15 86.7 81 59.3
FAN19G2984 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.4e-15 85.9 49 81.6
FAN28G2359 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.4e-15 85.9 49 81.6
QL06p043875 Quercus lobata HOM05D001549 ORTHO05D003098 2.4e-15 85.9 46 84.8
FAN23G0473 Fragaria x ananassa HOM05D001549 ORTHO05D003098 3.1e-15 85.5 63 66.7
Atru.chr3.453 Acer truncatum HOM05D001549 ORTHO05D003098 4.1e-15 85.1 43 88.4
FvH4_1g14740 Fragaria vesca HOM05D001549 ORTHO05D003098 4.1e-15 85.1 45 86.7
Actinidia12081 Actinidia chinensis HOM05D001549 ORTHO05D003098 5.4e-15 84.7 45 86.7
Prupe.7G143000 Prunus persica HOM05D001549 ORTHO05D003098 5.4e-15 84.7 45 86.7
RcHm_v2.0_Chr1g0319111 Rosa chinensis HOM05D001549 ORTHO05D003098 5.4e-15 84.7 45 86.7
RcHm_v2.0_Chr2g0103681 Rosa chinensis HOM05D001549 ORTHO05D003098 5.4e-15 84.7 45 86.7
Eucgr.I01019 Eucalyptus grandis HOM05D001549 ORTHO05D003098 9.1e-15 84.0 49 77.6
Cfa004221 Carpinus fangiana HOM05D001549 ORTHO05D003098 1.6e-14 83.2 46 82.6
TAR628G1517 Trochodendron aralioides HOM05D001549 ORTHO05D003098 2.0e-14 82.8 45 88.9
Nn5g29397 Nelumbo nucifera HOM05D001549 ORTHO05D003098 2.7e-14 82.4 43 88.4
Haze_15180 Corylus avellana HOM05D001549 ORTHO05D003098 4.5e-14 81.6 45 84.4
Gohir.A11G045300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 7.7e-14 80.9 42 85.7
Gohir.D11G048800 Gossypium hirsutum HOM05D001549 ORTHO05D003098 7.7e-14 80.9 42 85.7
PSO675G5453 Papaver somniferum HOM05D001549 ORTHO05D003098 7.7e-14 80.9 42 88.1
Gorai.007G052400 Gossypium raimondii HOM05D001549 ORTHO05D003098 1.7e-13 79.7 42 83.3
Sed0004252 Sechium edule HOM05D001549 ORTHO05D003098 1.7e-13 79.7 45 82.2
FAN26G1027 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.2e-13 79.3 45 82.2
MD02G1160500 Malus domestica HOM05D001549 ORTHO05D003098 2.2e-13 79.3 43 83.7
DCAR_025681 Daucus carota HOM05D001549 ORTHO05D003098 2.9e-13 79.0 45 80.0
Thecc.01G047400 Theobroma cacao HOM05D001549 ORTHO05D003098 3.8e-13 78.6 42 83.3
Potri.007G035900 Populus trichocarpa HOM05D001549 ORTHO05D003098 5.0e-13 78.2 42 88.1
Aqoxy6G00926 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 1.1e-12 77.0 43 81.4
Cc07_g05500 Coffea canephora HOM05D001549 ORTHO05D003098 1.1e-12 77.0 45 80.0
Sabra07G0031400 Salix brachista HOM05D001549 ORTHO05D003098 1.1e-12 77.0 42 85.7
TWI73G0625 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 1.1e-12 77.0 45 80.0
COL.COLO4_11319 Corchorus olitorius HOM05D001549 ORTHO05D003098 1.5e-12 76.6 46 73.9
Cpa.g.sc15.91 Carica papaya HOM05D001549 ORTHO05D003098 1.9e-12 76.3 45 77.8
MBI16_g19886_MAGBIO Magnolia biondii HOM05D001549 ORTHO05D003098 2.5e-12 75.9 45 75.6
ClCG02G017060 Citrullus lanatus HOM05D001549 ORTHO05D003098 4.2e-12 75.1 45 77.8
PGR042G3280 Punica granatum HOM05D001549 ORTHO05D003098 4.2e-12 75.1 46 73.9
Nitab4.5_0000108g0230 Nicotiana tabacum HOM05D001549 ORTHO05D003098 5.5e-12 74.7 41 82.9
Nitab4.5_0001014g0130 Nicotiana tabacum HOM05D001549 ORTHO05D003098 5.5e-12 74.7 41 82.9
Manes.13G130700 Manihot esculenta HOM05D001549 ORTHO05D003098 7.2e-12 74.3 40 85.0
THA.LOC104827094 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 9.4e-12 73.9 41 80.5
Sc16g0001540 Simmondsia chinensis HOM05D001549 ORTHO05D003098 1.2e-11 73.6 43 76.7
CsaV3_2G003710 Cucumis sativus L. HOM05D001549 ORTHO05D003098 1.6e-11 73.2 45 75.6
Peaxi162Scf00535g00733 Petunia axillaris HOM05D001549 ORTHO05D003098 1.6e-11 73.2 40 82.5
MELO3C004423.2 Cucumis melo HOM05D001549 ORTHO05D003098 3.6e-11 72.0 43 76.7
Oeu021854.1 Olea europaea HOM05D001549 ORTHO05D003098 3.6e-11 72.0 42 73.8
CAN.G836.28 Capsicum annuum HOM05D001549 ORTHO05D003098 4.7e-11 71.6 41 80.5
Lsat_1_v5_gn_4_177661 Lactuca sativa HOM05D001549 ORTHO05D003098 4.7e-11 71.6 40 82.5
ECA232G4408 Erigeron canadensis HOM05D001549 ORTHO05D003098 6.1e-11 71.2 42 78.6
HanXRQChr09g0264421 Helianthus annuus HOM05D001549 ORTHO05D003098 6.1e-11 71.2 43 76.7
CDE01G0335 Ceratophyllum demersum HOM05D001549 ORTHO05D003098 4.0e-10 68.6 45 71.1
Solyc02g090180.3 Solanum lycopersicum HOM05D001549 ORTHO05D003098 4.0e-10 68.6 41 75.6
Sopen02g034870 Solanum pennellii HOM05D001549 ORTHO05D003098 4.0e-10 68.6 41 75.6
Hund16303 Selenicereus undatus HOM05D001549 ORTHO05D003098 6.8e-10 67.8 42 73.8
BcaB04g20082 Brassica carinata HOM05D001549 ORTHO05D003098 8.8e-10 67.4 41 70.7
Lsat_1_v5_gn_1_103300 Lactuca sativa HOM05D001549 ORTHO05D003098 8.8e-10 67.4 40 77.5
arahy.Tifrunner.gnm1.ann1.NDG4UC Arachis hypogaea HOM05D001549 ORTHO05D003098 1.2e-09 67.0 45 68.9
arahy.Tifrunner.gnm1.ann1.WXMK30 Arachis hypogaea HOM05D001549 ORTHO05D003098 1.2e-09 67.0 45 68.9
Psat4g089680 Pisum sativum HOM05D001549 ORTHO05D003098 1.2e-09 67.0 45 68.9
PGSC0003DMG400010077 Solanum tuberosum HOM05D001549 ORTHO05D003098 1.5e-09 66.6 41 73.2
HPP92_019638 Vanilla planifolia HOM05D001549 ORTHO05D003098 2.0e-09 66.2 43 67.4
Lj4g0010242 Lotus japonicus HOM05D001549 ORTHO05D003098 2.6e-09 65.9 45 66.7
Glyma.02G062400 Glycine max HOM05D001549 ORTHO05D003098 3.4e-09 65.5 45 62.2
Lalb_Chr16g0388481 Lupinus albus HOM05D001549 ORTHO05D003098 4.4e-09 65.1 43 69.8
Aa31LG1G15510 Aethionema arabicum HOM05D001549 ORTHO05D003098 7.5e-09 64.3 41 70.7
Glyma.16G144700 Glycine max HOM05D001549 ORTHO05D003098 7.5e-09 64.3 45 64.4
Migut.H00490 Erythranthe guttata HOM05D001549 ORTHO05D003098 9.8e-09 63.9 40 75.0
Lsat_1_v5_gn_3_122601 Lactuca sativa HOM05D001549 ORTHO05D003098 9.8e-09 63.9 38 78.9
ATR0733G205 Amborella trichopoda HOM05D001549 ORTHO05D003098 1.3e-08 63.5 40 67.5
Medtr8g079030 Medicago truncatula HOM05D001549 ORTHO05D003098 1.3e-08 63.5 43 67.4
SGA_v2.0_scaffold204G41617 Striga asiatica HOM05D001549 ORTHO05D003098 1.3e-08 63.5 40 72.5
AUR62003825 Chenopodium quinoa HOM05D001549 ORTHO05D003098 1.7e-08 63.2 42 66.7
SalBow1G8516 Salvia bowleyana HOM05D001549 ORTHO05D003098 1.7e-08 63.2 39 71.8
Ca_22217_v3 Cicer arietinum L. HOM05D001549 ORTHO05D003098 2.2e-08 62.8 45 64.4
Migut.L00243 Erythranthe guttata HOM05D001549 ORTHO05D003098 2.2e-08 62.8 40 72.5
Migut.L00820 Erythranthe guttata HOM05D001549 ORTHO05D003098 2.2e-08 62.8 40 72.5
AL8G44420 Arabidopsis lyrata HOM05D001549 ORTHO05D003098 2.8e-08 62.4 41 68.3
AT5G66960 Arabidopsis thaliana HOM05D001549 ORTHO05D003098 2.8e-08 62.4 41 68.3
CARHR280720 Cardamine hirsuta HOM05D001549 ORTHO05D003098 2.8e-08 62.4 41 68.3
Zm00001eb100490 Zea mays HOM05D001549 ORTHO05D003098 2.8e-08 62.4 40 75.0
Carub.0008s2754 Capsella rubella HOM05D001549 ORTHO05D003098 3.7e-08 62.0 41 68.3
AUR62001979 Chenopodium quinoa HOM05D001549 ORTHO05D003098 3.7e-08 62.0 42 61.9
Sp2g29700 Schrenkiella parvula HOM05D001549 ORTHO05D003098 3.7e-08 62.0 41 68.3
BcaC04g23178 Brassica carinata HOM05D001549 ORTHO05D003098 4.9e-08 61.6 41 68.3
C09p11360 Brassica napus HOM05D001549 ORTHO05D003098 4.9e-08 61.6 41 68.3
TPR.G30330 Trifolium pratense HOM05D001549 ORTHO05D003098 4.9e-08 61.6 45 62.2
BolC9t54024H Brassica oleracea HOM05D001549 ORTHO05D003098 6.3e-08 61.2 39 69.2
SHI08735 Sapria himalayana HOM05D001549 ORTHO05D003098 6.3e-08 61.2 32 84.4
unitig_21.g20533 Utricularia gibba HOM05D001549 ORTHO05D003098 6.3e-08 61.2 40 70.0
Phvul.003G248800 Phaseolus vulgaris HOM05D001549 ORTHO05D003098 8.3e-08 60.8 45 60.0
VMungo0738G0001 Vigna mungo HOM05D001549 ORTHO05D003098 8.3e-08 60.8 45 60.0
Thhalv10003673m.g Eutrema salsugineum HOM05D001549 ORTHO05D003098 1.1e-07 60.5 41 70.7
A09p09610 Brassica napus HOM05D001549 ORTHO05D003098 1.4e-07 60.1 41 68.3
BraA09t36610Z Brassica rapa HOM05D001549 ORTHO05D003098 1.4e-07 60.1 41 68.3
BcaB02g09966 Brassica carinata HOM05D001549 ORTHO05D003098 9.2e-07 57.4 41 63.4


User provided reference genes

Program Settings