Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 7.8e-283 976.5 496 100.0
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.6e-278 961.4 496 98.4
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 4.8e-200 701.4 496 70.8
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 9.8e-185 650.6 502 68.3
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 1.8e-183 646.4 497 68.2
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 1.3e-181 640.2 498 65.5
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 2.8e-179 632.5 501 64.5
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 1.2e-177 627.1 499 64.9
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 3.2e-175 619.0 501 64.1
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 1.8e-170 603.2 502 62.4
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.5e-166 589.0 500 61.0
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 4.6e-166 588.6 511 61.4
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.7e-165 586.6 505 61.2
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 1.9e-164 583.2 502 60.0
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 7.3e-164 581.3 500 60.6
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 6.2e-163 578.2 501 59.5
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 5.8e-161 571.6 501 58.1
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.7e-160 570.1 506 59.7
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 9.2e-159 564.3 504 59.1
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 9.2e-159 564.3 503 59.2
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 2.1e-158 563.1 503 58.8
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 3.5e-158 562.4 510 59.6
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 3.0e-157 559.3 508 58.3
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 3.0e-157 559.3 501 58.7
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.1e-156 557.4 502 60.4
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.1e-156 557.4 506 57.7
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 7.3e-156 554.7 506 57.5
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.1e-154 550.8 488 58.8
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.3e-154 549.7 488 58.8
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 8.9e-154 547.7 502 57.4
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 1.7e-152 543.5 504 56.3
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 2.2e-152 543.1 504 57.1
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 6.4e-152 541.6 515 57.3
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 7.1e-151 538.1 500 57.2
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 1.2e-150 537.3 497 56.3
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 3.0e-149 532.7 518 56.4
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 5.6e-148 528.5 505 54.9
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 1.2e-147 527.3 487 56.5
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 2.2e-144 516.5 429 62.9
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 2.9e-144 516.2 501 53.5
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 3.2e-143 512.7 505 56.8
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 2.7e-142 509.6 504 53.0
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 6.9e-138 495.0 420 59.8
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 9.9e-137 491.1 503 55.3
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 1.4e-135 487.3 519 51.3
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 4.2e-135 485.7 506 52.6
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.0e-133 481.1 446 54.7
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 1.3e-133 480.7 507 51.5
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 8.7e-133 478.0 424 58.5
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 5.6e-132 475.3 508 51.4
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 6.2e-131 471.9 508 50.4
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 6.2e-131 471.9 508 49.4
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 8.1e-131 471.5 510 48.8
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 1.4e-130 470.7 510 48.4
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 2.4e-130 469.9 510 48.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 3.1e-130 469.5 515 48.0
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 6.9e-130 468.4 510 48.6
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 3.8e-128 462.6 508 49.4
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.9e-128 462.2 416 58.7
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 6.4e-128 461.8 506 50.0
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 6.4e-128 461.8 416 58.2
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 1.4e-127 460.7 513 47.8
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 4.2e-127 459.1 415 57.3
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 5.1e-125 452.2 415 58.3
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 1.3e-123 447.6 506 50.0
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 2.2e-120 436.8 416 56.5
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 2.1e-118 430.3 411 54.3
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 2.1e-118 430.3 510 47.6
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 3.0e-109 399.8 415 54.0
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 9.7e-100 368.2 298 61.4
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 6.3e-99 365.5 362 55.0
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 3.4e-97 359.8 506 43.3
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 2.2e-96 357.1 463 45.1
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 8.2e-91 338.6 242 69.4
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 2.6e-84 317.0 563 39.4
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 4.1e-82 309.7 552 38.2
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 7.5e-68 262.3 504 34.5
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 6.3e-67 259.2 505 34.7
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.9e-47 194.5 165 61.8
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 7.8e-41 172.6 117 73.5
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 1.7e-40 171.4 475 28.6
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.5e-28 131.7 437 27.0
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 3.5e-17 94.0 251 31.9
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 1.3e-16 92.0 427 26.7
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 4.3e-07 60.5 91 31.9
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 2.8e-06 57.8 67 37.3


User provided reference genes

Program Settings