Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.6e-48 194.9 89 100.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.6e-43 178.3 88 89.8
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.4e-43 177.6 87 89.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.3e-42 176.0 87 88.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.6e-40 168.3 86 89.5
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.0e-39 166.4 89 89.9
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 8.5e-39 163.3 86 83.7
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.1e-38 162.9 87 85.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.2e-38 161.4 88 81.8
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.2e-38 160.2 84 84.5
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.2e-38 160.2 84 84.5
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.2e-38 160.2 84 84.5
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.2e-38 160.2 88 80.7
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 7.2e-38 160.2 86 87.2
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.2e-37 159.5 87 79.3
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.2e-37 159.5 87 79.3
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.2e-37 159.5 87 85.1
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.6e-37 159.1 85 85.9
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.6e-37 159.1 88 83.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.7e-37 158.3 86 86.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.7e-37 158.3 88 81.8
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.6e-37 157.9 86 84.9
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 4.7e-37 157.5 87 83.9
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 6.1e-37 157.1 87 83.9
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.1e-37 157.1 86 81.4
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 8.0e-37 156.8 86 81.4
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.0e-36 156.4 88 81.8
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.0e-36 156.4 92 80.4
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-36 156.0 88 81.8
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.4e-36 156.0 88 83.0
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.4e-36 156.0 86 84.9
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.8e-36 155.6 86 83.7
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-36 155.6 85 83.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.3e-36 155.2 89 78.7
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.0e-36 154.8 87 82.8
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 5.2e-36 154.1 86 84.9
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 5.2e-36 154.1 87 81.6
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 5.2e-36 154.1 86 79.1
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 6.7e-36 153.7 89 82.0
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 6.7e-36 153.7 90 81.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 6.7e-36 153.7 89 82.0
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 8.8e-36 153.3 86 79.1
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.1e-35 152.9 87 80.5
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.5e-35 152.5 86 79.1
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.5e-35 152.5 84 81.0
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.5e-35 152.5 84 83.3
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.5e-35 152.5 86 82.6
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.5e-35 152.5 84 81.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.5e-35 152.5 86 80.2
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.5e-35 152.5 86 80.2
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.5e-35 152.5 87 81.6
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 2.0e-35 152.1 86 84.9
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.0e-35 152.1 86 81.4
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.0e-35 152.1 84 82.1
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 3.3e-35 151.4 89 76.4
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.4e-35 151.0 88 79.5
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.4e-35 151.0 86 77.9
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 5.7e-35 150.6 87 81.6
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 5.7e-35 150.6 87 79.3
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 86 77.9
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 86 77.9
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 86 79.1
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 5.7e-35 150.6 86 79.1
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 86 79.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 7.4e-35 150.2 84 78.6
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 7.4e-35 150.2 84 78.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 7.4e-35 150.2 84 79.8
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.4e-35 150.2 86 79.1
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.7e-35 149.8 85 78.8
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 9.7e-35 149.8 92 79.3
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.3e-34 149.4 84 79.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.3e-34 149.4 84 79.8
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.7e-34 149.1 88 79.5
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 3.7e-34 147.9 78 82.1
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 4.8e-34 147.5 84 78.6
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 6.3e-34 147.1 84 79.8
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 8.2e-34 146.7 70 87.1
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.2e-34 146.7 79 82.3
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 8.2e-34 146.7 88 78.4
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.1e-33 146.4 87 78.2
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.1e-33 146.4 90 76.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.1e-33 146.4 88 77.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.4e-33 146.0 70 87.1
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.8e-33 145.6 85 77.6
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.4e-33 145.2 87 77.0
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-33 144.8 85 76.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 3.1e-33 144.8 85 76.5
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.1e-33 144.8 86 76.7
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 4.1e-33 144.4 86 74.4
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 5.3e-33 144.1 84 77.4
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.3e-33 144.1 85 76.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 7.0e-33 143.7 76 80.3
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 7.0e-33 143.7 88 76.1
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 9.1e-33 143.3 88 79.5
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 9.1e-33 143.3 87 74.7
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-32 142.9 87 74.7
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.2e-32 142.9 87 74.7
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.0e-32 142.1 87 74.7
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.5e-32 141.0 83 75.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 5.9e-32 140.6 76 78.9
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 5.9e-32 140.6 88 73.9
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-31 139.4 87 73.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.7e-31 139.0 87 73.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.7e-31 139.0 87 73.6
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-31 138.7 87 72.4
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 6.5e-31 137.1 157 48.4
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 8.5e-31 136.7 82 75.6
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 8.5e-31 136.7 78 80.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 8.5e-31 136.7 109 63.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.0e-28 129.8 63 88.9
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.0e-28 129.8 63 88.9
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 7.5e-27 123.6 64 89.1
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 7.7e-24 113.6 84 65.5
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.9e-23 111.7 62 83.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.8e-23 111.3 64 81.2
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 8.5e-23 110.2 62 82.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.5e-23 110.2 64 84.4
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.5e-22 109.4 63 77.8
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.9e-22 109.0 66 75.8
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.5e-22 108.6 62 79.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.2e-22 108.2 62 80.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 4.2e-22 107.8 82 65.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 5.5e-22 107.5 64 81.2
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 7.2e-22 107.1 61 78.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.1e-21 104.0 62 74.2
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 6.1e-21 104.0 61 78.7
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 8.0e-21 103.6 64 75.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 8.0e-21 103.6 64 75.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-20 102.8 61 77.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-20 102.8 61 77.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.0e-20 101.7 61 75.4
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 3.0e-20 101.7 61 67.2
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 8.8e-20 100.1 61 78.7
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 8.8e-20 100.1 60 80.0
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 8.8e-20 100.1 56 78.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.4e-19 97.8 68 72.1
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-18 96.3 64 71.9
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.7e-18 95.9 64 71.9
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 3.7e-18 94.7 64 71.9
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.8e-18 94.4 60 76.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.8e-18 94.4 64 70.3
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 5.5e-14 80.9 65 53.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.2e-14 80.5 39 87.2
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 4.7e-13 77.8 77 53.2
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 2.0e-11 72.4 69 50.7


User provided reference genes

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