Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.8e-88 329.3 183 100.0
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 5.3e-35 151.8 204 53.9
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.3e-33 147.1 198 50.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.2e-31 140.6 127 66.1
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.5e-31 139.0 199 47.7
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.0e-31 138.3 195 47.2
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-30 137.1 212 47.6
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.0e-30 136.0 210 43.8
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.9e-30 135.6 204 44.6
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 6.7e-30 134.8 206 46.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-29 134.0 195 46.2
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-29 134.0 195 46.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.5e-29 133.7 219 43.4
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.9e-29 133.3 207 46.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.5e-29 132.9 199 47.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.1e-27 127.5 197 45.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.4e-27 127.1 201 48.8
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 6.9e-27 124.8 200 44.0
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 9.0e-27 124.4 206 49.5
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.8e-26 121.7 198 43.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 9.9e-26 120.9 207 49.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.7e-25 120.2 201 44.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.1e-24 117.5 221 44.8
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.2e-24 115.5 195 43.1
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.5e-24 115.2 212 46.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.5e-24 115.2 192 43.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.5e-23 112.5 210 40.5
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.5e-21 107.1 201 41.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 3.3e-21 105.9 189 46.0
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.1e-20 103.2 196 43.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.7e-20 102.4 200 42.0
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 8.2e-20 101.3 172 40.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 4.0e-19 99.0 215 44.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 5.3e-19 98.6 211 40.3
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.2e-18 97.4 204 38.7
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.0e-18 96.7 170 43.5
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.6e-18 96.3 196 44.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.6e-18 94.7 213 41.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-17 94.0 215 33.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.9e-17 92.8 208 46.6
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 3.8e-17 92.4 204 43.1
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.8e-17 92.4 174 42.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 6.5e-17 91.7 215 40.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 8.4e-17 91.3 210 41.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.1e-16 90.9 197 40.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.5e-16 89.7 195 39.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.2e-16 89.4 214 40.7
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 4.2e-16 89.0 199 43.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.5e-16 88.6 195 35.9
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 9.3e-16 87.8 206 37.4
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 9.3e-16 87.8 208 36.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 9.3e-16 87.8 231 37.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.2e-15 87.4 209 35.9
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-15 87.4 232 38.8
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-15 87.0 201 39.8
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.7e-15 86.3 205 38.0
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.5e-15 85.9 235 34.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 4.6e-15 85.5 214 36.0
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-15 85.5 236 37.7
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-15 85.5 236 37.7
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.6e-15 85.5 201 39.8
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 6.0e-15 85.1 230 37.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.0e-15 85.1 186 36.6
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.5e-13 79.7 130 41.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.5e-13 79.7 195 33.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 9.7e-13 77.8 142 47.9
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.6e-12 77.0 195 34.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.7e-12 75.9 130 43.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.3e-12 75.1 180 32.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 8.2e-12 74.7 178 39.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.2e-12 74.7 173 42.8
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.4e-11 73.9 219 35.2
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 2.4e-11 73.2 186 38.7
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.4e-11 73.2 143 39.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.4e-11 73.2 186 36.6
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.1e-11 72.4 188 42.0
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 9.0e-11 71.2 216 37.0
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 9.0e-11 71.2 137 38.7
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.5e-10 70.5 226 33.2
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.6e-10 69.7 171 35.1
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.6e-10 69.7 172 34.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 4.5e-10 68.9 210 31.4
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.5e-10 68.9 211 32.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 7.7e-10 68.2 190 39.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.0e-09 67.8 219 34.2
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.3e-09 67.4 186 37.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.9e-09 66.2 173 35.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.1e-08 64.3 171 38.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.4e-08 63.9 147 36.1
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.9e-08 63.5 217 30.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 3.2e-08 62.8 198 35.9
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 1.2e-07 60.8 143 45.5
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.7e-07 59.7 210 34.8
SGA_v2.0_scaffold36G14538 Striga asiatica HOM05D004123 ORTHO05D004768 1.0e-06 57.8 145 39.3
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.3e-06 56.6 152 34.9
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.3e-06 56.6 156 33.3
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.0e-06 56.2 185 28.6
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.0e-06 56.2 181 31.5
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.9e-06 55.8 185 36.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.1e-06 55.5 232 37.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.7e-06 55.1 182 30.2


User provided reference genes

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