Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.9e-67 258.1 138 100.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.8e-67 256.9 138 99.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.7e-66 254.2 138 98.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.1e-60 234.2 138 89.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.4e-59 233.0 138 89.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.4e-59 233.0 138 89.1
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 89.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.9e-59 231.5 138 88.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 6.7e-59 230.7 139 89.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.8e-59 230.3 138 87.7
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-58 229.9 139 89.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.0e-58 229.2 139 89.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.6e-58 228.8 138 87.7
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.3e-58 228.4 138 87.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.3e-58 228.4 138 87.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.3e-58 228.4 139 88.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.7e-58 227.6 140 87.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.7e-58 227.6 138 87.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.4e-58 227.3 139 87.8
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.4e-58 227.3 138 87.0
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.3e-57 226.5 140 84.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.7e-57 226.1 138 86.2
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.2e-57 225.7 141 87.2
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 87.1
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.2e-57 225.7 138 86.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 87.1
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.8e-57 225.3 140 87.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 84.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 3.7e-57 224.9 139 87.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.8e-57 224.6 138 85.5
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 87.8
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.4e-56 223.0 141 85.1
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-56 223.0 141 85.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.4e-56 222.2 140 85.0
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 4.1e-56 221.5 138 86.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.3e-56 221.1 139 85.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 7.0e-56 220.7 139 85.6
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 7.0e-56 220.7 138 84.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 84.9
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 9.1e-56 220.3 140 84.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.0e-55 219.2 137 83.2
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.6e-55 218.8 140 83.6
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 84.3
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 3.5e-55 218.4 138 84.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.5e-55 218.0 138 82.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 5.9e-55 217.6 137 82.5
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.9e-55 217.6 139 84.2
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.7e-55 217.2 140 82.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.0e-54 216.9 138 83.3
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.3e-54 216.5 143 82.5
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.2e-54 215.7 138 83.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.9e-54 215.3 140 82.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 81.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.9e-54 215.3 138 84.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.9e-54 215.3 143 81.8
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 5.0e-54 214.5 138 81.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.0e-54 214.5 143 79.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 81.2
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 81.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 6.5e-54 214.2 139 82.7
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 8.5e-54 213.8 140 80.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.1e-53 213.4 137 81.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.1
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 81.2
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 81.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 80.4
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 142 81.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 4.2e-53 211.5 137 81.8
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 5.5e-53 211.1 138 81.2
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 9.4e-53 210.3 137 81.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 81.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.1e-52 209.1 141 80.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.1e-52 209.1 147 76.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.7e-52 208.8 137 80.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.1e-52 207.6 137 80.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 8.0e-52 207.2 148 78.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 151 74.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.4e-51 206.5 151 74.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-51 206.1 149 75.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.8e-51 206.1 164 71.3
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.7e-51 204.1 152 75.0
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 77.3
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.6e-50 202.2 138 78.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 5.7e-50 201.1 138 76.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 7.4e-50 200.7 140 77.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.7e-49 198.4 160 68.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.8e-49 198.0 139 78.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.8e-49 198.0 140 76.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 6.3e-49 197.6 152 72.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.2e-49 197.2 138 76.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-48 196.8 144 74.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-48 196.4 155 71.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-48 196.4 155 71.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-48 196.1 141 77.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.8e-48 196.1 112 94.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 3.1e-48 195.3 141 77.3
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.3e-48 194.5 144 72.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 5.3e-48 194.5 172 64.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.6e-47 192.2 138 73.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.5e-47 191.8 146 72.6
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 7.7e-47 190.7 148 70.9
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-46 188.7 134 75.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 9.4e-45 183.7 176 60.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.7e-44 182.2 113 86.7
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 6.1e-44 181.0 168 61.3
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 8.0e-44 180.6 134 73.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.2e-43 177.9 136 67.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.5e-42 174.1 136 70.6
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 9.8e-42 173.7 114 79.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.8e-41 171.4 115 80.9
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.4e-40 169.9 138 63.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-40 168.3 113 81.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.7e-39 165.6 119 77.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.9e-39 164.5 166 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 6.5e-38 161.0 139 64.7
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 6.5e-38 161.0 126 75.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.2e-37 158.7 112 76.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-36 155.6 134 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-35 152.9 134 66.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.7e-34 147.9 136 59.6
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 9.8e-34 147.1 111 74.8
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.7e-33 145.2 97 81.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.3e-33 144.4 131 64.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.4e-32 142.5 168 54.2
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 9.1e-32 140.6 108 71.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.9e-31 137.9 118 65.3
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.7e-30 136.3 155 54.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 135 56.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.5e-29 131.3 81 87.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-27 126.7 114 64.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-27 126.7 80 85.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-27 125.6 80 83.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 83.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 8.9e-27 124.0 138 52.9
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.6e-26 122.5 77 85.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.4e-26 122.1 76 88.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 85 77.6
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.8e-24 116.3 85 75.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.2e-24 115.5 141 49.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.7e-23 112.5 69 81.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.9e-23 111.3 69 84.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.5e-21 105.9 69 78.3
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.0e-19 100.5 58 89.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.2e-19 98.2 100 59.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.4e-16 90.1 69 72.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.4e-16 89.4 57 84.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 7.0e-16 87.8 70 68.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-14 83.2 77 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 5.6e-13 78.2 130 38.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 6.2e-12 74.7 72 59.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 6.2e-12 74.7 72 59.7
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.3e-09 67.0 58 60.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-08 62.8 49 65.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 51 62.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 5.4e-08 61.6 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-06 57.0 97 41.2
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-06 57.0 97 41.2
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-06 55.1 44 65.9


User provided reference genes

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