Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039250 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.7e-33 144.8 78 100.0
CSS0040349 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.7e-33 144.8 78 100.0
CSS0023699 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 4.5e-20 100.9 63 90.5
CSS0049047 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.0e-19 99.8 63 88.9
CSS0025195 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 2.9e-19 98.2 63 87.3
ClCG01G018850 Citrullus lanatus HOM05D001361 ORTHO05D002529 1.2e-15 86.3 63 73.0
MELO3C007764.2 Cucumis melo HOM05D001361 ORTHO05D002529 4.4e-15 84.3 63 69.8
vmacro01232 Vaccinium macrocarpon HOM05D001361 ORTHO05D002529 7.5e-15 83.6 63 69.8
CsaV3_6G045510 Cucumis sativus L. HOM05D001361 ORTHO05D002529 1.7e-14 82.4 63 68.3
GSVIVG01020065001 Vitis vinifera HOM05D001361 ORTHO05D002529 1.7e-14 82.4 63 69.8
AT1G27000 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 3.7e-14 81.3 63 66.7
CiPaw.06G081200 Carya illinoinensis HOM05D001361 ORTHO05D002529 4.9e-14 80.9 63 65.1
Actinidia08216 Actinidia chinensis HOM05D001361 ORTHO05D002529 6.3e-14 80.5 63 68.3
Manes.05G097501 Manihot esculenta HOM05D001361 ORTHO05D002529 1.1e-13 79.7 65 61.5
Sp1g21790 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.1e-13 79.7 63 65.1
Hma1.2p1_0341F.1_g130600 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 1.4e-13 79.3 63 63.5
CSS0018559 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 1.8e-13 79.0 78 61.5
Thhalv10008298m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.8e-13 79.0 63 63.5
Carub.0001s2397 Capsella rubella HOM05D001361 ORTHO05D002529 2.4e-13 78.6 63 63.5
CSS0038700 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 3.2e-13 78.2 73 72.6
Cpa.g.c28586.2 Carica papaya HOM05D001361 ORTHO05D002529 3.2e-13 78.2 65 64.6
Manes.01G189500 Manihot esculenta HOM05D001361 ORTHO05D002529 3.2e-13 78.2 65 61.5
AL1G38520 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 4.1e-13 77.8 63 63.5
CARHR024910 Cardamine hirsuta HOM05D001361 ORTHO05D002529 4.1e-13 77.8 63 61.9
A08p27700 Brassica napus HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 66.7
C08p22610 Brassica napus HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 66.7
BolC8t49899H Brassica oleracea HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 66.7
Oeu017067.2 Olea europaea HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 65.1
QL03p065510 Quercus lobata HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 66.7
TWI18G1247 Tripterygium wilfordii HOM05D001361 ORTHO05D002529 9.2e-13 76.6 63 61.9
Cfa009024 Carpinus fangiana HOM05D001361 ORTHO05D002529 1.2e-12 76.3 75 56.0
Haze_12055 Corylus avellana HOM05D001361 ORTHO05D002529 1.2e-12 76.3 63 63.5
Dinv44088 Davidia involucrata HOM05D001361 ORTHO05D002529 1.2e-12 76.3 63 61.9
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-12 75.9 63 66.7
Aa31LG7G8150 Aethionema arabicum HOM05D001361 ORTHO05D002529 2.0e-12 75.5 63 60.3
CiPaw.05G139100 Carya illinoinensis HOM05D001361 ORTHO05D002529 2.0e-12 75.5 63 63.5
Eucgr.B03413 Eucalyptus grandis HOM05D001361 ORTHO05D002529 2.7e-12 75.1 63 60.3
Psat2g144360 Pisum sativum HOM05D001361 ORTHO05D002529 3.5e-12 74.7 63 57.1
Sed0011652 Sechium edule HOM05D001361 ORTHO05D002529 3.5e-12 74.7 63 61.9
Phvul.002G065900 Phaseolus vulgaris HOM05D001361 ORTHO05D002529 4.6e-12 74.3 63 55.6
Potri.010G092700 Populus trichocarpa HOM05D001361 ORTHO05D002529 4.6e-12 74.3 63 60.3
Dinv43649 Davidia involucrata HOM05D001361 ORTHO05D002529 5.9e-12 73.9 63 60.3
Duzib251G0880 Durio zibethinus HOM05D001361 ORTHO05D002529 5.9e-12 73.9 51 74.5
PGR102G2437 Punica granatum HOM05D001361 ORTHO05D002529 5.9e-12 73.9 63 60.3
Duzib248G0766 Durio zibethinus HOM05D001361 ORTHO05D002529 7.8e-12 73.6 76 53.9
BraA08t34705Z Brassica rapa HOM05D001361 ORTHO05D002529 1.0e-11 73.2 63 65.1
Gorai.006G051200 Gossypium raimondii HOM05D001361 ORTHO05D025695 1.0e-11 73.2 58 65.5
PGR119G1577 Punica granatum HOM05D001361 ORTHO05D002529 1.0e-11 73.2 63 60.3
Sabra10G0050900 Salix brachista HOM05D001361 ORTHO05D002529 1.0e-11 73.2 63 60.3
arahy.Tifrunner.gnm1.ann1.KTR52G Arachis hypogaea HOM05D001361 ORTHO05D002529 1.3e-11 72.8 63 57.1
arahy.Tifrunner.gnm1.ann1.PUF87X Arachis hypogaea HOM05D001361 ORTHO05D002529 1.3e-11 72.8 63 57.1
arahy.Tifrunner.gnm1.ann1.S44JZV Arachis hypogaea HOM05D001361 ORTHO05D002529 1.3e-11 72.8 63 57.1
Lj2g0009692 Lotus japonicus HOM05D001361 ORTHO05D002529 1.3e-11 72.8 63 54.0
Gohir.A13G072100 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.7e-11 72.4 51 70.6
Gohir.D02G057300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.7e-11 72.4 86 52.3
Gohir.D05G291300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.7e-11 72.4 51 70.6
Gohir.D13G067800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.7e-11 72.4 51 70.6
Gorai.013G077300 Gossypium raimondii HOM05D001361 ORTHO05D002529 1.7e-11 72.4 51 70.6
SGA_v2.0_scaffold54G19444 Striga asiatica HOM05D001361 ORTHO05D002529 1.7e-11 72.4 63 60.3
Migut.A01170 Erythranthe guttata HOM05D001361 ORTHO05D002529 2.3e-11 72.0 63 60.3
Gohir.D04G022372 Gossypium hirsutum HOM05D001361 ORTHO05D025695 2.3e-11 72.0 51 70.6
Gohir.D08G096500 Gossypium hirsutum HOM05D001361 ORTHO05D025695 2.3e-11 72.0 65 60.0
Sc04g0008420 Simmondsia chinensis HOM05D001361 ORTHO05D002529 2.3e-11 72.0 60 56.7
arahy.Tifrunner.gnm1.ann1.MZWE21 Arachis hypogaea HOM05D001361 ORTHO05D002529 2.9e-11 71.6 63 55.6
Carub.0005s0164 Capsella rubella HOM05D001361 ORTHO05D002529 5.0e-11 70.9 54 68.5
Gohir.D04G084248 Gossypium hirsutum HOM05D001361 ORTHO05D002529 5.0e-11 70.9 60 61.7
Potri.008G149000 Populus trichocarpa HOM05D001361 ORTHO05D002529 5.0e-11 70.9 63 58.7
TAR371G0316 Trochodendron aralioides HOM05D001361 ORTHO05D002529 5.0e-11 70.9 63 57.1
EL10Ac6g13158 Beta vulgaris HOM05D001361 ORTHO05D002529 6.6e-11 70.5 54 63.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.6e-11 70.5 51 68.6
Nn4g23060 Nelumbo nucifera HOM05D001361 ORTHO05D002529 6.6e-11 70.5 63 55.6
Lalb_Chr04g0256311 Lupinus albus HOM05D001361 ORTHO05D002529 8.6e-11 70.1 63 50.8
Rhsim12G0130400 Rhododendron simsii HOM05D001361 ORTHO05D002529 8.6e-11 70.1 63 61.9
Thecc.02G354100 Theobroma cacao HOM05D001361 ORTHO05D002529 8.6e-11 70.1 51 68.6
BcaB07g30695 Brassica carinata HOM05D001361 ORTHO05D002529 1.1e-10 69.7 54 64.8
Thhalv10004758m.g Eutrema salsugineum HOM05D001361 ORTHO05D002529 1.1e-10 69.7 54 64.8
Gohir.A12G166300 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.1e-10 69.7 51 68.6
Gohir.D12G169800 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.1e-10 69.7 51 68.6
DCAR_028266 Daucus carota HOM05D001361 ORTHO05D002529 1.5e-10 69.3 63 61.9
BcaC06g31220 Brassica carinata HOM05D001361 ORTHO05D002529 1.9e-10 68.9 54 64.8
AT2G02730 Arabidopsis thaliana HOM05D001361 ORTHO05D002529 2.5e-10 68.6 54 66.7
AL5G11920 Arabidopsis lyrata HOM05D001361 ORTHO05D002529 3.3e-10 68.2 54 64.8
BcaC05g26354 Brassica carinata HOM05D001361 ORTHO05D002529 3.3e-10 68.2 63 61.9
C05p23790 Brassica napus HOM05D001361 ORTHO05D002529 3.3e-10 68.2 63 61.9
BolC5t31098H Brassica oleracea HOM05D001361 ORTHO05D002529 3.3e-10 68.2 63 61.9
Atru.chr11.1898 Acer truncatum HOM05D001361 ORTHO05D002529 4.3e-10 67.8 63 55.6
Aa31LG2G7530 Aethionema arabicum HOM05D001361 ORTHO05D002529 5.6e-10 67.4 54 64.8
ATR1120G156 Amborella trichopoda HOM05D001361 ORTHO05D002529 5.6e-10 67.4 63 55.6
unitig_52.g17200 Utricularia gibba HOM05D001361 ORTHO05D002529 5.6e-10 67.4 63 54.0
TPR.G18467 Trifolium pratense HOM05D001361 ORTHO05D002529 7.3e-10 67.0 64 56.2
A09p40430 Brassica napus HOM05D001361 ORTHO05D002529 9.5e-10 66.6 63 61.9
BraA06t27237Z Brassica rapa HOM05D001361 ORTHO05D002529 9.5e-10 66.6 54 63.0
BraA09t39539Z Brassica rapa HOM05D001361 ORTHO05D002529 9.5e-10 66.6 63 61.9
Ca_04747_v3 Cicer arietinum L. HOM05D001361 ORTHO05D002529 9.5e-10 66.6 63 54.0
BcaC06g34044 Brassica carinata HOM05D001361 ORTHO05D002529 1.2e-09 66.2 54 63.0
C07p33340 Brassica napus HOM05D001361 ORTHO05D002529 1.2e-09 66.2 54 63.0
BolC7t43844H Brassica oleracea HOM05D001361 ORTHO05D002529 1.2e-09 66.2 54 63.0
CARHR145160 Cardamine hirsuta HOM05D001361 ORTHO05D002529 1.2e-09 66.2 54 64.8
Glyma.02G020800 Glycine max HOM05D001361 ORTHO05D002529 1.2e-09 66.2 48 64.6
Sp2g13840 Schrenkiella parvula HOM05D001361 ORTHO05D002529 1.6e-09 65.9 54 61.1
Glyma.01G042800 Glycine max HOM05D001361 ORTHO05D002529 2.8e-09 65.1 48 62.5
BcaC04g21517 Brassica carinata HOM05D001361 ORTHO05D002529 3.6e-09 64.7 54 59.3
C09p30830 Brassica napus HOM05D001361 ORTHO05D002529 3.6e-09 64.7 54 59.3
BolC9t55945H Brassica oleracea HOM05D001361 ORTHO05D002529 3.6e-09 64.7 54 59.3
AUR62028828 Chenopodium quinoa HOM05D001361 ORTHO05D002529 3.6e-09 64.7 54 55.6
VMungo1215G2637 Vigna mungo HOM05D001361 ORTHO05D002529 4.7e-09 64.3 63 50.8
MSTRG.24843 Avicennia marina HOM05D001361 ORTHO05D002529 6.2e-09 63.9 63 54.0
A09p23940 Brassica napus HOM05D001361 ORTHO05D002529 6.2e-09 63.9 54 59.3
PSO591G0091 Papaver somniferum HOM05D001361 ORTHO05D002529 6.2e-09 63.9 57 54.4
A06p43520 Brassica napus HOM05D001361 ORTHO05D002529 8.0e-09 63.5 54 61.1
MBI04_g10405_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D002529 8.0e-09 63.5 63 54.0
MSTRG.12169 Avicennia marina HOM05D001361 ORTHO05D002529 1.0e-08 63.2 63 55.6
Migut.E00752 Erythranthe guttata HOM05D001361 ORTHO05D002529 1.4e-08 62.8 49 63.3
HanXRQChr17g0538121 Helianthus annuus HOM05D001361 ORTHO05D002529 1.8e-08 62.4 63 54.0
Nitab4.5_0000411g0030 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.8e-08 62.4 59 50.8
Nitab4.5_0002778g0040 Nicotiana tabacum HOM05D001361 ORTHO05D002529 1.8e-08 62.4 56 55.4
Nitab4.5_0000834g0010 Nicotiana tabacum HOM05D001361 ORTHO05D002529 2.3e-08 62.0 59 50.8
PSO832G1946 Papaver somniferum HOM05D001361 ORTHO05D002529 2.3e-08 62.0 57 52.6
Prupe.1G268900 Prunus persica HOM05D001361 ORTHO05D002529 2.3e-08 62.0 63 60.3
CAN.G137.6 Capsicum annuum HOM05D001361 ORTHO05D002529 3.1e-08 61.6 56 55.4
Solyc08g005230.3 Solanum lycopersicum HOM05D001361 ORTHO05D002529 3.1e-08 61.6 56 55.4
CSS0020990 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D002529 4.0e-08 61.2 44 77.3
Nitab4.5_0000556g0200 Nicotiana tabacum HOM05D001361 ORTHO05D002529 4.0e-08 61.2 56 53.6
PGSC0003DMG400015124 Solanum tuberosum HOM05D001361 ORTHO05D002529 5.2e-08 60.8 56 53.6
TAR629G0132 Trochodendron aralioides HOM05D001361 ORTHO05D002529 5.2e-08 60.8 63 55.6
MD16G1077900 Malus domestica HOM05D001361 ORTHO05D002529 6.8e-08 60.5 53 62.3
Lsat_1_v5_gn_6_3540 Lactuca sativa HOM05D001361 ORTHO05D002529 8.9e-08 60.1 60 60.0
Sopen08g001260 Solanum pennellii HOM05D001361 ORTHO05D002529 8.9e-08 60.1 56 53.6
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.2e-07 59.7 64 50.0
Lsat_1_v5_gn_3_19241 Lactuca sativa HOM05D001361 ORTHO05D002529 1.2e-07 59.7 64 54.7
Medtr5g038550 Medicago truncatula HOM05D001361 ORTHO05D002529 1.5e-07 59.3 62 45.2
CAN.G726.10 Capsicum annuum HOM05D001361 ORTHO05D002529 2.0e-07 58.9 54 48.1
HanXRQChr13g0396491 Helianthus annuus HOM05D001361 ORTHO05D002529 2.0e-07 58.9 44 63.6
Atru.chr6.1371 Acer truncatum HOM05D001361 ORTHO05D002529 4.4e-07 57.8 63 50.8
Peaxi162Scf00456g00212 Petunia axillaris HOM05D001361 ORTHO05D002529 4.4e-07 57.8 59 47.5
CDE02G3302 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 5.8e-07 57.4 59 52.5
Gorai.008G182400 Gossypium raimondii HOM05D001361 ORTHO05D002529 5.8e-07 57.4 51 60.8
Gohir.D11G231540 Gossypium hirsutum HOM05D001361 ORTHO05D025695 7.5e-07 57.0 83 44.6
Gorai.012G030700 Gossypium raimondii HOM05D001361 ORTHO05D025695 7.5e-07 57.0 82 43.9
CANSAT64G0710 Cannabis sativa HOM05D001361 ORTHO05D002529 9.8e-07 56.6 63 44.4
MD13G1078200 Malus domestica HOM05D001361 ORTHO05D002529 9.8e-07 56.6 53 56.6
THA.LOC104822929 Tarenaya hassleriana HOM05D001361 ORTHO05D002529 1.3e-06 56.2 41 65.9
CDE09G0127 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 1.7e-06 55.8 59 54.2
MD05G1007200 Malus domestica HOM05D001361 ORTHO05D002529 2.2e-06 55.5 53 54.7
Gohir.D04G027950 Gossypium hirsutum HOM05D001361 ORTHO05D002529 2.9e-06 55.1 82 42.7
Actinidia03190 Actinidia chinensis HOM05D001361 ORTHO05D002529 8.3e-06 53.5 38 68.4


User provided reference genes

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