Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.6e-82 308.1 150 100.0
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.9e-79 298.5 150 97.3
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.9e-79 297.7 150 97.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.1e-60 234.6 170 74.7
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.5e-51 205.7 170 67.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 6.4e-47 191.0 170 64.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.2e-46 188.3 170 61.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 5.1e-44 181.4 170 58.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.3e-43 178.7 170 58.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.8e-42 175.6 168 57.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.6e-42 175.3 170 58.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.9e-41 171.0 167 56.3
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.2e-40 170.2 172 53.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.5e-40 169.9 169 55.6
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.0e-40 169.5 166 57.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.8e-40 167.9 169 55.6
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 7.6e-40 167.5 170 54.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.3e-39 166.8 166 56.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.9e-39 164.9 172 55.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.9e-39 164.9 167 55.7
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.4e-39 164.5 170 55.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 8.4e-39 164.1 167 55.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-38 163.7 170 54.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-38 163.7 170 55.3
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 9.3e-38 160.6 167 55.1
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.2e-37 160.2 167 53.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.1e-37 159.5 172 54.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.5e-37 158.7 169 53.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.0e-37 157.9 170 52.4
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 6.0e-37 157.9 170 51.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 7.9e-37 157.5 165 53.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 7.9e-37 157.5 165 53.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-36 157.1 170 54.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.0e-36 157.1 170 54.1
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.0e-36 157.1 167 53.3
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.3e-36 156.8 167 52.7
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.3e-36 156.8 167 53.3
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-36 156.8 165 53.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.8e-36 156.4 170 51.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.3e-36 156.0 170 53.5
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.0e-36 155.6 170 54.1
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.0e-36 155.6 168 51.8
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.1e-35 153.7 167 52.1
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.5e-35 153.3 166 52.4
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.5e-35 153.3 169 53.3
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.5e-35 152.5 166 53.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.5e-35 152.5 170 51.2
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.5e-35 152.5 165 53.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.3e-35 152.1 167 54.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 7.4e-35 151.0 165 51.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-34 149.8 173 51.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-34 149.8 173 51.4
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.6e-34 149.8 165 52.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.6e-34 149.8 170 50.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.1e-34 149.4 173 51.4
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.1e-34 149.4 160 53.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.8e-34 149.1 167 52.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.8e-34 149.1 168 52.4
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.8e-34 149.1 167 52.7
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.7e-34 148.7 164 52.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.8e-34 148.3 170 52.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.8e-34 148.3 165 51.5
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.2e-34 147.9 166 52.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-33 147.1 165 50.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.4e-33 146.7 167 52.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.8e-33 146.4 170 50.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.8e-33 146.4 165 50.9
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 6.9e-33 144.4 168 51.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.0e-33 144.1 171 50.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.5e-32 143.3 166 47.6
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.3e-31 140.2 166 50.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.7e-31 139.8 172 45.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.9e-31 139.0 165 50.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.9e-30 136.3 171 46.8
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-30 136.3 165 50.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.2e-30 135.6 166 49.4
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.5e-30 134.8 173 48.6
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.6e-29 133.3 158 51.3
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.7e-29 132.5 167 48.5
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.7e-29 132.5 166 47.6
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.5e-29 132.1 166 47.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.5e-29 132.1 166 48.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 6.0e-29 131.3 167 49.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 6.0e-29 131.3 167 49.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 6.0e-29 131.3 167 49.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.9e-29 131.0 162 50.0
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 7.9e-29 131.0 167 49.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 7.9e-29 131.0 103 65.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.0e-28 130.6 166 47.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.0e-28 130.6 166 46.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-28 129.8 166 48.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.3e-28 129.4 166 47.6
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.3e-28 129.4 166 47.6
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.0e-28 129.0 168 48.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.9e-28 128.6 166 48.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.7e-28 127.9 173 48.6
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 8.7e-28 127.5 167 47.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 8.7e-28 127.5 167 47.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 8.7e-28 127.5 168 46.4
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-27 127.1 168 45.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.5e-27 126.7 164 47.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.9e-27 126.3 167 47.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.5e-27 125.9 166 47.6
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.5e-27 125.9 166 47.6
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 7.4e-27 124.4 166 48.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.1e-26 122.9 166 48.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 4.8e-26 121.7 167 43.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 6.2e-26 121.3 158 50.0
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 8.2e-26 120.9 90 67.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.0e-25 118.6 170 44.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.2e-24 117.1 91 64.8
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.5e-24 116.7 127 54.3
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-22 110.5 166 44.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.1e-22 110.5 166 44.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-22 109.8 168 44.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.9e-22 109.8 166 42.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.5e-22 108.2 99 59.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.7e-21 105.9 150 47.3
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 2.7e-21 105.9 91 61.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.6e-21 105.1 167 43.7
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.0e-20 104.0 166 41.0
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.1e-20 101.7 146 45.9
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 6.7e-20 101.3 162 42.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.1e-19 100.5 164 43.3
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-19 99.4 79 62.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.2e-18 96.3 124 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.6e-16 89.4 159 39.0
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.4e-16 89.0 161 39.8
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.0e-15 87.4 62 69.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.7e-15 86.7 163 38.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.2e-15 86.3 67 65.7
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 5.0e-15 85.1 68 63.2
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 8.5e-15 84.3 130 43.8
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.1e-14 84.0 65 72.3
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.2e-14 82.0 63 73.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-13 80.1 112 45.5
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.6e-13 80.1 165 38.8
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.6e-13 78.6 75 53.3
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.9e-13 77.8 88 51.1
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.0e-12 75.9 135 37.8
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.9e-12 75.5 115 39.1
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.1e-12 75.1 117 36.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.1e-11 73.9 136 33.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.5e-11 72.8 126 39.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.3e-11 72.4 62 59.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.4e-11 71.2 58 62.1
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.4e-11 71.2 58 62.1
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.2e-10 69.7 168 34.5
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.3e-10 68.2 54 63.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-09 67.0 157 38.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.4e-09 67.0 83 44.6
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.1e-09 65.9 117 37.6
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.3e-09 65.1 90 44.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.3e-09 65.1 48 56.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.1e-09 64.3 101 39.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 9.1e-09 64.3 59 47.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 8.5e-07 57.8 62 50.0


User provided reference genes

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