Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040319 Camellia sinensis var. sinensis HOM05D002038 ORTHO05D002165 1.3e-28 129.0 66 100.0
vmacro06006 Vaccinium macrocarpon HOM05D002038 ORTHO05D002165 3.6e-10 67.8 39 87.2
Nn8g40527 Nelumbo nucifera HOM05D002038 ORTHO05D002165 8.0e-10 66.6 48 75.0
Thhalv10022720m.g Eutrema salsugineum HOM05D002038 ORTHO05D002165 1.4e-09 65.9 36 94.4
Rhsim03G0265200 Rhododendron simsii HOM05D002038 ORTHO05D002165 1.4e-09 65.9 36 94.4
Aa31LG8G16040 Aethionema arabicum HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
AL3G52980 Arabidopsis lyrata HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
AT2G18950 Arabidopsis thaliana HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
BcaB03g16688 Brassica carinata HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
BcaC06g36503 Brassica carinata HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
A07p01690 Brassica napus HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
C07p03550 Brassica napus HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
BraA07t27971Z Brassica rapa HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
CARHR109490 Cardamine hirsuta HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
Oeu002548.1 Olea europaea HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 94.4
Sp3g32400 Schrenkiella parvula HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 91.7
Sc14g0001320 Simmondsia chinensis HOM05D002038 ORTHO05D002165 1.8e-09 65.5 36 88.9
CANSAT35G0104 Cannabis sativa HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
Gohir.A13G212200 Gossypium hirsutum HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
Gohir.D13G216300 Gossypium hirsutum HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
Gorai.013G246600 Gossypium raimondii HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
Thecc.09G174400 Theobroma cacao HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
TAR625G1212 Trochodendron aralioides HOM05D002038 ORTHO05D002165 2.3e-09 65.1 36 91.7
MSTRG.19717 Avicennia marina HOM05D002038 ORTHO05D002165 3.1e-09 64.7 36 91.7
THA.LOC104819975 Tarenaya hassleriana HOM05D002038 ORTHO05D002165 3.1e-09 64.7 36 91.7
EL10Ac8g18305 Beta vulgaris HOM05D002038 ORTHO05D002165 4.0e-09 64.3 40 82.5
Carub.0003s3318 Capsella rubella HOM05D002038 ORTHO05D002165 4.0e-09 64.3 36 88.9
Duzib168G2033 Durio zibethinus HOM05D002038 ORTHO05D002165 4.0e-09 64.3 40 82.5
HanXRQChr10g0308511 Helianthus annuus HOM05D002038 ORTHO05D002165 4.0e-09 64.3 36 88.9
HanXRQChr12g0358341 Helianthus annuus HOM05D002038 ORTHO05D002165 4.0e-09 64.3 36 88.9
Lsat_1_v5_gn_5_85220 Lactuca sativa HOM05D002038 ORTHO05D002165 4.0e-09 64.3 36 88.9
ECA234G1664 Erigeron canadensis HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 86.1
FvH4_4g07870 Fragaria vesca HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
FAN07G0946 Fragaria x ananassa HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
FAN12G2509 Fragaria x ananassa HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
FAN17G2282 Fragaria x ananassa HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
FAN22G1277 Fragaria x ananassa HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
Lju50A8G4 Lonicera japonica HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
QL02p098385 Quercus lobata HOM05D002038 ORTHO05D002165 5.2e-09 63.9 36 88.9
TWI32G0246 Tripterygium wilfordii HOM05D002038 ORTHO05D002165 5.2e-09 63.9 40 80.0
TWI34G1785 Tripterygium wilfordii HOM05D002038 ORTHO05D002165 5.2e-09 63.9 40 80.0
MSTRG.26215 Avicennia marina HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 86.1
MELO3C004006.2 Cucumis melo HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 88.9
Dinv41221 Davidia involucrata HOM05D002038 ORTHO05D002165 8.9e-09 63.2 48 68.8
Peaxi162Scf01054g00033 Petunia axillaris HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 88.9
Sed0019185 Sechium edule HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 88.9
Solyc07g017770.3 Solanum lycopersicum HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 88.9
Sopen07g006610 Solanum pennellii HOM05D002038 ORTHO05D002165 8.9e-09 63.2 36 88.9
Atru.chr7.850 Acer truncatum HOM05D002038 ORTHO05D002165 1.2e-08 62.8 36 86.1
CiPaw.07G193900 Carya illinoinensis HOM05D002038 ORTHO05D002165 1.2e-08 62.8 36 86.1
Glyma.13G097800 Glycine max HOM05D002038 ORTHO05D002165 1.2e-08 62.8 36 86.1
GSVIVG01029247001 Vitis vinifera HOM05D002038 ORTHO05D002165 1.2e-08 62.8 36 86.1
Cfa013403 Carpinus fangiana HOM05D002038 ORTHO05D002165 1.5e-08 62.4 36 86.1
Haze_21944 Corylus avellana HOM05D002038 ORTHO05D002165 1.5e-08 62.4 36 86.1
Manes.06G022400 Manihot esculenta HOM05D002038 ORTHO05D002165 1.5e-08 62.4 36 86.1
Nitab4.5_0001869g0020 Nicotiana tabacum HOM05D002038 ORTHO05D002165 1.5e-08 62.4 36 88.9
Aqoxy7G02968 Aquilegia oxysepala HOM05D002038 ORTHO05D002165 2.0e-08 62.0 48 68.8
CANSAT11G1615 Cannabis sativa HOM05D002038 ORTHO05D002165 2.0e-08 62.0 36 86.1
ClCG11G012020 Citrullus lanatus HOM05D002038 ORTHO05D002165 2.0e-08 62.0 36 86.1
CsaV3_2G008500 Cucumis sativus L. HOM05D002038 ORTHO05D002165 2.0e-08 62.0 36 86.1
Dinv19556 Davidia involucrata HOM05D002038 ORTHO05D002165 2.0e-08 62.0 48 68.8
Zm00001eb389370 Zea mays HOM05D002038 ORTHO05D002165 2.0e-08 62.0 36 86.1
Nitab4.5_0000055g0180 Nicotiana tabacum HOM05D002038 ORTHO05D002165 2.6e-08 61.6 34 94.1
PSO063G6647 Papaver somniferum HOM05D002038 ORTHO05D002165 2.6e-08 61.6 36 86.1
PSO170G4677 Papaver somniferum HOM05D002038 ORTHO05D002165 2.6e-08 61.6 36 86.1
Phvul.003G143900 Phaseolus vulgaris HOM05D002038 ORTHO05D002165 2.6e-08 61.6 36 83.3
CAN.G33.20 Capsicum annuum HOM05D002038 ORTHO05D002165 3.4e-08 61.2 36 83.3
Hma1.2p1_1086F.1_g255435 Hydrangea macrophylla HOM05D002038 ORTHO05D002165 3.4e-08 61.2 34 91.2
Hund26326 Selenicereus undatus HOM05D002038 ORTHO05D002165 3.4e-08 61.2 40 77.5
Ciclev10008442m.g Citrus clementina HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 80.6
DCAR_017980 Daucus carota HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 80.6
Lalb_Chr13g0300131 Lupinus albus HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 83.3
MD13G1248300 Malus domestica HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 86.1
MD16G1255400 Malus domestica HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 86.1
Potri.018G090700 Populus trichocarpa HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 83.3
Prupe.1G082500 Prunus persica HOM05D002038 ORTHO05D002165 4.4e-08 60.8 36 86.1
Actinidia38490 Actinidia chinensis HOM05D002038 ORTHO05D002165 5.8e-08 60.5 33 97.0
Cc06_g13050 Coffea canephora HOM05D002038 ORTHO05D002165 5.8e-08 60.5 36 83.3
PGR044G0048 Punica granatum HOM05D002038 ORTHO05D002165 5.8e-08 60.5 36 86.1
SalBow1G1504 Salvia bowleyana HOM05D002038 ORTHO05D002165 7.5e-08 60.1 36 83.3
ATR0580G106 Amborella trichopoda HOM05D002038 ORTHO05D002165 9.8e-08 59.7 36 80.6
Eucgr.C02385 Eucalyptus grandis HOM05D002038 ORTHO05D002165 9.8e-08 59.7 36 83.3
RcHm_v2.0_Chr4g0401151 Rosa chinensis HOM05D002038 ORTHO05D002165 9.8e-08 59.7 36 83.3
VMungo1215G2898 Vigna mungo HOM05D002038 ORTHO05D002165 9.8e-08 59.7 34 85.3
Migut.K00231 Erythranthe guttata HOM05D002038 ORTHO05D002165 1.3e-07 59.3 36 77.8
Os06g0658900 Oryza sativa ssp. japonica HOM05D002038 ORTHO05D002165 1.3e-07 59.3 36 83.3
Potri.006G166100 Populus trichocarpa HOM05D002038 ORTHO05D002165 1.3e-07 59.3 36 80.6
HPP92_023086 Vanilla planifolia HOM05D002038 ORTHO05D002165 1.7e-07 58.9 36 77.8
AUR62044427 Chenopodium quinoa HOM05D002038 ORTHO05D002165 2.2e-07 58.5 48 68.8
CDE02G0793 Ceratophyllum demersum HOM05D002038 ORTHO05D002165 3.7e-07 57.8 36 80.6
AUR62021320 Chenopodium quinoa HOM05D002038 ORTHO05D002165 3.7e-07 57.8 34 85.3
Sabra18G0077900 Salix brachista HOM05D002038 ORTHO05D002165 3.7e-07 57.8 34 82.4
unitig_744.g24139 Utricularia gibba HOM05D000669 ORTHO05D002165 3.7e-07 57.8 36 77.8
ATR0629G136 Amborella trichopoda HOM05D002038 ORTHO05D002165 6.4e-07 57.0 36 72.2
AUR62033237 Chenopodium quinoa HOM05D002038 ORTHO05D002165 6.4e-07 57.0 35 80.0
SGA_v2.0_scaffold17G07940 Striga asiatica HOM05D002038 ORTHO05D002165 6.4e-07 57.0 42 64.3
Ca_21238_v3 Cicer arietinum L. HOM05D002038 ORTHO05D002165 8.3e-07 56.6 35 77.1
unitig_21.g20651 Utricularia gibba HOM05D002038 ORTHO05D002165 8.3e-07 56.6 40 70.0
Glyma.17G061900 Glycine max HOM05D002038 ORTHO05D002165 1.1e-06 56.2 33 84.8
AagrBONN_evm.TU.Sc2ySwM_228.4940 Anthoceros agrestis HOM05D002038 ORTHO05D002165 2.4e-06 55.1 36 72.2
Cfa013091 Carpinus fangiana HOM05D002038 ORTHO05D002165 5.4e-06 53.9 36 75.0
Haze_21448 Corylus avellana HOM05D002038 ORTHO05D002165 5.4e-06 53.9 36 75.0
Medtr4g127800 Medicago truncatula HOM05D002038 ORTHO05D002165 5.4e-06 53.9 32 81.2
GSVIVG01035912001 Vitis vinifera HOM05D002038 ORTHO05D002165 5.4e-06 53.9 53 54.7


User provided reference genes

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