Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040306 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 1.4e-33 145.6 69 100.0
CSS0041787 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 1.5e-27 125.6 69 85.5
CiPaw.03G247500 Carya illinoinensis HOM05D003717 ORTHO05D004848 5.8e-27 123.6 69 82.6
CARHR265580 Cardamine hirsuta HOM05D003717 ORTHO05D004848 2.2e-26 121.7 69 82.6
Eucgr.C01375 Eucalyptus grandis HOM05D003717 ORTHO05D004848 2.2e-26 121.7 69 84.1
Cc06_g08140 Coffea canephora HOM05D003717 ORTHO05D004848 2.9e-26 121.3 66 83.3
Thhalv10012867m.g Eutrema salsugineum HOM05D003717 ORTHO05D004848 6.4e-26 120.2 69 81.2
Cpa.g.sc46.33 Carica papaya HOM05D003717 ORTHO05D004848 1.1e-25 119.4 69 79.7
AL8G27060 Arabidopsis lyrata HOM05D003717 ORTHO05D004848 1.4e-25 119.0 69 81.2
Oeu055968.1 Olea europaea HOM05D003717 ORTHO05D004848 1.4e-25 119.0 66 83.3
THA.LOC104826549 Tarenaya hassleriana HOM05D003717 ORTHO05D004848 1.4e-25 119.0 69 78.3
Sp6g14780 Schrenkiella parvula HOM05D003717 ORTHO05D004848 1.9e-25 118.6 69 78.3
TAR636G2912 Trochodendron aralioides HOM05D003717 ORTHO05D004848 3.2e-25 117.9 67 80.6
BcaB08g35617 Brassica carinata HOM05D003717 ORTHO05D004848 4.1e-25 117.5 69 79.7
SGA_v2.0_scaffold229G43305 Striga asiatica HOM05D003717 ORTHO05D004848 4.1e-25 117.5 69 79.7
Actinidia26376 Actinidia chinensis HOM05D003717 ORTHO05D004848 5.4e-25 117.1 69 78.3
Sabra18G0108200 Salix brachista HOM05D003717 ORTHO05D004848 7.1e-25 116.7 71 83.1
Dinv36487 Davidia involucrata HOM05D003717 ORTHO05D004848 9.2e-25 116.3 69 76.8
TAR625G0037 Trochodendron aralioides HOM05D003717 ORTHO05D004848 1.2e-24 115.9 67 79.1
Thecc.09G130900 Theobroma cacao HOM05D003717 ORTHO05D004848 1.6e-24 115.5 69 78.3
Actinidia21963 Actinidia chinensis HOM05D003717 ORTHO05D004848 2.1e-24 115.2 66 81.8
Carub.0008s1272 Capsella rubella HOM05D003717 ORTHO05D004848 2.7e-24 114.8 69 78.3
CiPaw.04G174300 Carya illinoinensis HOM05D003717 ORTHO05D004848 2.7e-24 114.8 70 80.0
COL.COLO4_35140 Corchorus olitorius HOM05D003717 ORTHO05D004848 2.7e-24 114.8 66 78.8
Haze_25523 Corylus avellana HOM05D003717 ORTHO05D004848 2.7e-24 114.8 66 80.3
Aqoxy7G03655 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 3.5e-24 114.4 66 78.8
AT5G52580 Arabidopsis thaliana HOM05D003717 ORTHO05D004848 4.6e-24 114.0 69 79.7
BcaC03g14516 Brassica carinata HOM05D003717 ORTHO05D004848 4.6e-24 114.0 69 76.8
MD02G1027400 Malus domestica HOM05D003717 ORTHO05D004848 4.6e-24 114.0 71 76.1
PGR142G2827 Punica granatum HOM05D003717 ORTHO05D004848 4.6e-24 114.0 66 81.8
GSVIVG01015576001 Vitis vinifera HOM05D003717 ORTHO05D004848 4.6e-24 114.0 69 78.3
Potri.006G066300 Populus trichocarpa HOM05D003717 ORTHO05D004848 6.0e-24 113.6 71 83.1
Prupe.7G247700 Prunus persica HOM05D003717 ORTHO05D004848 6.0e-24 113.6 73 76.7
QL02p089699 Quercus lobata HOM05D003717 ORTHO05D004848 6.0e-24 113.6 68 80.9
BNapus_Darmor_BZH_scaffold_232p00030 Brassica napus HOM05D003717 ORTHO05D004848 7.8e-24 113.2 69 76.8
Cfa003414 Carpinus fangiana HOM05D003717 ORTHO05D004848 7.8e-24 113.2 66 78.8
Manes.14G115300 Manihot esculenta HOM05D003717 ORTHO05D004848 7.8e-24 113.2 71 78.9
GSVIVG01015579001 Vitis vinifera HOM05D003717 ORTHO05D004848 1.0e-23 112.8 69 78.3
BraA02t06235Z Brassica rapa HOM05D003717 ORTHO05D004848 1.7e-23 112.1 69 75.4
Sed0027813 Sechium edule HOM05D003717 ORTHO05D004848 1.7e-23 112.1 69 75.4
Gohir.D08G258900 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.3e-23 111.7 69 75.4
CAN.G551.81 Capsicum annuum HOM05D003717 ORTHO05D004848 3.0e-23 111.3 66 75.8
FvH4_7g25820 Fragaria vesca HOM05D003717 ORTHO05D004848 3.0e-23 111.3 71 73.2
Nitab4.5_0001349g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 3.0e-23 111.3 66 75.8
Ciclev10007683m.g Citrus clementina HOM05D003717 ORTHO05D004848 3.9e-23 110.9 66 78.8
Potri.018G127500 Populus trichocarpa HOM05D003717 ORTHO05D004848 3.9e-23 110.9 68 82.4
SalBow6G6762 Salvia bowleyana HOM05D003717 ORTHO05D004848 3.9e-23 110.9 66 78.8
A02p11700 Brassica napus HOM05D003717 ORTHO05D004848 5.1e-23 110.5 69 73.9
FvH4_1g02680 Fragaria vesca HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
FAN06G0971 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
FAN19G0930 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
FAN23G0973 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
FAN26G2736 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
FAN28G2297 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.1e-23 110.5 71 73.2
BolC2t08086H Brassica oleracea HOM05D003717 ORTHO05D004848 6.6e-23 110.2 69 73.9
Duzib187G1288 Durio zibethinus HOM05D003717 ORTHO05D004848 6.6e-23 110.2 69 75.4
Gohir.D06G053000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 6.6e-23 110.2 66 77.3
Gorai.004G276400 Gossypium raimondii HOM05D003717 ORTHO05D004848 6.6e-23 110.2 69 72.5
Gorai.010G061900 Gossypium raimondii HOM05D003717 ORTHO05D004848 6.6e-23 110.2 66 77.3
RcHm_v2.0_Chr2g0087771 Rosa chinensis HOM05D003717 ORTHO05D004848 6.6e-23 110.2 71 71.8
Solyc12g009610.2 Solanum lycopersicum HOM05D003717 ORTHO05D004848 6.6e-23 110.2 66 75.8
Sopen12g004600 Solanum pennellii HOM05D003717 ORTHO05D004848 6.6e-23 110.2 66 75.8
CSS0038528 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 8.6e-23 109.8 60 85.0
ClCG11G003270 Citrullus lanatus HOM05D003717 ORTHO05D004848 8.6e-23 109.8 69 73.9
CsaV3_2G003070 Cucumis sativus L. HOM05D003717 ORTHO05D004848 8.6e-23 109.8 69 73.9
MSTRG.6072 Avicennia marina HOM05D003717 ORTHO05D004848 1.1e-22 109.4 66 75.8
Duzib168G1487 Durio zibethinus HOM05D003717 ORTHO05D004848 1.1e-22 109.4 66 77.3
Peaxi162Scf00313g00819 Petunia axillaris HOM05D003717 ORTHO05D004848 1.1e-22 109.4 61 80.3
TWI32G0090 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 1.1e-22 109.4 66 75.8
CAN.G778.1 Capsicum annuum HOM05D003717 ORTHO05D004848 1.5e-22 109.0 66 75.8
MELO3C004462.2 Cucumis melo HOM05D003717 ORTHO05D004848 1.5e-22 109.0 69 73.9
DCAR_009320 Daucus carota HOM05D003717 ORTHO05D004848 1.5e-22 109.0 67 80.6
Nn2g12095 Nelumbo nucifera HOM05D003717 ORTHO05D004848 1.5e-22 109.0 67 74.6
Gohir.A08G238200 Gossypium hirsutum HOM05D003717 ORTHO05D004848 1.9e-22 108.6 69 72.5
ECA240G3427 Erigeron canadensis HOM05D003717 ORTHO05D004848 2.5e-22 108.2 66 75.8
HanXRQChr09g0243961 Helianthus annuus HOM05D003717 ORTHO05D004848 2.5e-22 108.2 66 75.8
Nitab4.5_0006319g0050 Nicotiana tabacum HOM05D003717 ORTHO05D004848 2.5e-22 108.2 64 76.6
Manes.06G048400 Manihot esculenta HOM05D003717 ORTHO05D004848 3.3e-22 107.8 68 77.9
Phvul.003G167800 Phaseolus vulgaris HOM05D003717 ORTHO05D004848 3.3e-22 107.8 69 72.5
Sabra06G0049200 Salix brachista HOM05D003717 ORTHO05D004848 3.3e-22 107.8 71 76.1
vmacro06150 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 3.3e-22 107.8 66 75.8
MD15G1168800 Malus domestica HOM05D003717 ORTHO05D004848 4.3e-22 107.5 71 73.2
Hund26546 Selenicereus undatus HOM05D003717 ORTHO05D004848 4.3e-22 107.5 70 75.7
VMungo1215G1390 Vigna mungo HOM05D003717 ORTHO05D004848 4.3e-22 107.5 67 73.1
Migut.J01218 Erythranthe guttata HOM05D003717 ORTHO05D004848 5.6e-22 107.1 70 75.7
Lj7A427G45 Lonicera japonica HOM05D003717 ORTHO05D004848 5.6e-22 107.1 66 74.2
PGSC0003DMG402030895 Solanum tuberosum HOM05D003717 ORTHO05D004848 5.6e-22 107.1 66 74.2
vmacro07715 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 5.6e-22 107.1 70 75.7
Atru.chr7.1107 Acer truncatum HOM05D003717 ORTHO05D004848 7.3e-22 106.7 66 75.8
Ca_06936_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 9.6e-22 106.3 66 74.2
Ca_30465_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 9.6e-22 106.3 66 74.2
Gohir.A05G014800 Gossypium hirsutum HOM05D003717 ORTHO05D004848 9.6e-22 106.3 66 71.2
Gohir.D05G016000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 9.6e-22 106.3 66 71.2
Gorai.009G016100 Gossypium raimondii HOM05D003717 ORTHO05D004848 9.6e-22 106.3 66 71.2
Peaxi162Scf00088g01619 Petunia axillaris HOM05D003717 ORTHO05D004848 9.6e-22 106.3 67 74.6
TWI63G0928 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 9.6e-22 106.3 69 71.0
Glyma.17G112200 Glycine max HOM05D003717 ORTHO05D004848 1.2e-21 105.9 71 73.2
Ah.14g079420 Amaranthus hybridus HOM05D003717 ORTHO05D004848 1.6e-21 105.5 70 75.7
EL10Ac8g18710 Beta vulgaris HOM05D003717 ORTHO05D004848 1.6e-21 105.5 70 75.7
COL.COLO4_13247 Corchorus olitorius HOM05D003717 ORTHO05D004848 1.6e-21 105.5 62 75.8
MBI15_g08165_MAGBIO Magnolia biondii HOM05D003717 ORTHO05D004848 1.6e-21 105.5 66 71.2
Sopen07g003880 Solanum pennellii HOM05D003717 ORTHO05D004848 1.6e-21 105.5 66 72.7
CANSAT11G0921 Cannabis sativa HOM05D003717 ORTHO05D004848 2.1e-21 105.1 67 74.6
PSO210G0578 Papaver somniferum HOM05D003717 ORTHO05D004848 2.1e-21 105.1 67 74.6
arahy.Tifrunner.gnm1.ann1.QEV4QV Arachis hypogaea HOM05D003717 ORTHO05D004848 2.8e-21 104.8 66 74.2
SHI28847 Sapria himalayana HOM05D003717 ORTHO05D004848 3.6e-21 104.4 71 71.8
Lsat_1_v5_gn_7_44181 Lactuca sativa HOM05D003717 ORTHO05D004848 4.7e-21 104.0 66 71.2
Glyma.13G159100 Glycine max HOM05D003717 ORTHO05D004848 6.2e-21 103.6 71 70.4
Gohir.A06G054000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 6.2e-21 103.6 66 72.7
Lalb_Chr12g0198081 Lupinus albus HOM05D003717 ORTHO05D004848 6.2e-21 103.6 66 74.2
Psat4g040040 Pisum sativum HOM05D003717 ORTHO05D004848 6.2e-21 103.6 66 74.2
Lj4g0002653 Lotus japonicus HOM05D003717 ORTHO05D004848 8.1e-21 103.2 66 72.7
arahy.Tifrunner.gnm1.ann1.ZHFU2E Arachis hypogaea HOM05D003717 ORTHO05D004848 1.1e-20 102.8 66 72.7
PSO210G7704 Papaver somniferum HOM05D003717 ORTHO05D004848 1.1e-20 102.8 66 74.2
TPR.G26469 Trifolium pratense HOM05D003717 ORTHO05D004848 1.1e-20 102.8 66 72.7
AUR62011169 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.8e-20 102.1 70 72.9
AUR62013315 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.8e-20 102.1 70 72.9
FAN10G3828 Fragaria x ananassa HOM05D003717 ORTHO05D004848 2.4e-20 101.7 65 70.8
Medtr4g115090 Medicago truncatula HOM05D003717 ORTHO05D004848 4.0e-20 100.9 66 71.2
HanXRQChr03g0060941 Helianthus annuus HOM05D003717 ORTHO05D004848 6.9e-20 100.1 66 69.7
Rhsim01G0064300 Rhododendron simsii HOM05D003717 ORTHO05D004848 6.9e-20 100.1 66 71.2
DCAR_014898 Daucus carota HOM05D003717 ORTHO05D004848 8.9e-20 99.8 66 72.7
HanXRQChr03g0063211 Helianthus annuus HOM05D003717 ORTHO05D004848 8.9e-20 99.8 66 69.7
Lalb_Chr07g0179131 Lupinus albus HOM05D003717 ORTHO05D004848 1.2e-19 99.4 67 70.1
Nitab4.5_0012287g0010 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.5e-19 99.0 67 70.1
unitig_60.g25513 Utricularia gibba HOM05D003717 ORTHO05D004848 2.0e-19 98.6 73 71.2
Lsat_1_v5_gn_8_62521 Lactuca sativa HOM05D003717 ORTHO05D004848 3.4e-19 97.8 69 62.3
HPP92_010889 Vanilla planifolia HOM05D003717 ORTHO05D004848 4.4e-19 97.4 71 67.6
Sed0019028 Sechium edule HOM05D003717 ORTHO05D004848 5.8e-19 97.1 67 68.7
Sc14g0000170 Simmondsia chinensis HOM05D003717 ORTHO05D004848 9.9e-19 96.3 70 68.6
Os02g0709800 Oryza sativa ssp. japonica HOM05D003717 ORTHO05D004848 3.8e-18 94.4 70 67.1
Hund09277 Selenicereus undatus HOM05D003717 ORTHO05D004848 4.2e-17 90.9 70 61.4
Aqoxy7G02295 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 7.1e-17 90.1 56 75.0
Pp3c20_14740 Physcomitrium patens HOM05D003717 ORTHO05D004848 2.7e-16 88.2 62 66.1
SEGI_13709 Sequoiadendron giganteum HOM05D003717 ORTHO05D004848 2.7e-16 88.2 52 76.9
ATR0724G026 Amborella trichopoda HOM05D003717 ORTHO05D004848 6.0e-16 87.0 58 72.4
Mapoly0045s0037 Marchantia polymorpha HOM05D003717 ORTHO05D004848 1.3e-15 85.9 56 71.4
AagrBONN_evm.TU.Sc2ySwM_369.444 Anthoceros agrestis HOM05D003717 ORTHO05D004848 6.6e-15 83.6 52 76.9
CDE06G1365 Ceratophyllum demersum HOM05D003717 ORTHO05D004848 1.1e-14 82.8 54 70.4
CSS0028261 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 9.6e-14 79.7 46 78.3
Lsat_1_v5_gn_5_91980 Lactuca sativa HOM05D003717 ORTHO05D004848 6.9e-12 73.6 51 66.7
RcHm_v2.0_Chr7g0194011 Rosa chinensis HOM05D003717 ORTHO05D004848 5.8e-11 70.5 49 67.3
SMO137G0381 Selaginella moellendorffii HOM05D003717 ORTHO05D004848 1.3e-10 69.3 53 64.2
CBR_g5611 Chara braunii HOM05D003717 ORTHO05D004848 1.9e-09 65.5 47 66.0
CAN.G672.6 Capsicum annuum HOM05D000185 ORTHO05D000105 2.5e-06 55.1 34 67.6


User provided reference genes

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