Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040299 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.8e-28 128.6 69 100.0
CSS0036814 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.6e-16 89.0 69 75.4
CSS0030326 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.0e-15 86.3 87 64.4
CSS0032578 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.3e-14 80.9 87 63.2
CSS0028846 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.6e-13 77.8 78 65.4
Rhsim10G0099000 Rhododendron simsii HOM05D002156 ORTHO05D002328 2.0e-11 72.0 83 54.2
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 3.4e-11 71.2 83 53.0
CiPaw.02G001800 Carya illinoinensis HOM05D002156 ORTHO05D002328 5.8e-11 70.5 83 50.6
Dinv26941 Davidia involucrata HOM05D002156 ORTHO05D002328 1.7e-10 68.9 83 50.6
Haze_15273 Corylus avellana HOM05D002156 ORTHO05D002328 2.9e-10 68.2 83 49.4
Manes.12G115600 Manihot esculenta HOM05D002156 ORTHO05D002328 4.9e-10 67.4 83 48.2
Duzib147G1396 Durio zibethinus HOM05D002156 ORTHO05D002328 3.2e-09 64.7 83 44.6
Duzib264G1314 Durio zibethinus HOM05D002156 ORTHO05D002328 4.2e-09 64.3 83 45.8
Potri.007G005500 Populus trichocarpa HOM05D002156 ORTHO05D002328 5.4e-09 63.9 83 44.6
Thecc.01G073700 Theobroma cacao HOM05D002156 ORTHO05D002328 5.4e-09 63.9 83 48.2
Cc07_g07180 Coffea canephora HOM05D002156 ORTHO05D002328 7.1e-09 63.5 83 45.8
PGR102G2375 Punica granatum HOM05D002156 ORTHO05D002328 7.1e-09 63.5 83 45.8
Sabra07G0004000 Salix brachista HOM05D002156 ORTHO05D002328 7.1e-09 63.5 83 45.8
GSVIVG01002631001 Vitis vinifera HOM05D002156 ORTHO05D002328 7.1e-09 63.5 84 46.4
Dinv04039 Davidia involucrata HOM05D002156 ORTHO05D002328 1.2e-08 62.8 81 50.6
TAR381G0066 Trochodendron aralioides HOM05D002156 ORTHO05D002328 1.2e-08 62.8 80 47.5
THA.LOC104821209 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.1e-08 62.0 83 44.6
COL.COLO4_11588 Corchorus olitorius HOM05D002156 ORTHO05D002328 2.7e-08 61.6 83 44.6
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 7.9e-08 60.1 82 48.8
Gohir.A12G077600 Gossypium hirsutum HOM05D002156 ORTHO05D002328 7.9e-08 60.1 83 41.0
Gohir.D12G075800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 7.9e-08 60.1 83 41.0
Eucgr.H02313 Eucalyptus grandis HOM05D002156 ORTHO05D002328 1.0e-07 59.7 83 43.4
TWI74G0945 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.0e-07 59.7 83 41.0
Lj7A108T18 Lonicera japonica HOM05D002156 ORTHO05D002328 1.3e-07 59.3 65 58.5
Ciclev10025460m.g Citrus clementina HOM05D002156 ORTHO05D002328 1.8e-07 58.9 83 44.6
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.8e-07 58.9 83 41.0
Gorai.008G083300 Gossypium raimondii HOM05D002156 ORTHO05D002328 2.3e-07 58.5 83 39.8
Hund13956 Selenicereus undatus HOM05D002156 ORTHO05D002328 2.3e-07 58.5 83 43.4
Cpa.g.sc6.5 Carica papaya HOM05D002156 ORTHO05D002328 3.0e-07 58.2 83 42.2
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 3.0e-07 58.2 83 39.8
EL10Ac6g15612 Beta vulgaris HOM05D002156 ORTHO05D002328 5.1e-07 57.4 83 41.0
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 5.1e-07 57.4 82 41.5
CANSAT80G2770 Cannabis sativa HOM05D002156 ORTHO05D002328 1.5e-06 55.8 81 45.7
AUR62007524 Chenopodium quinoa HOM05D002156 ORTHO05D002328 1.5e-06 55.8 83 42.2
arahy.Tifrunner.gnm1.ann1.WVVG4E Arachis hypogaea HOM05D002156 ORTHO05D002328 1.9e-06 55.5 81 44.4
AUR62004015 Chenopodium quinoa HOM05D002156 ORTHO05D002328 1.9e-06 55.5 83 41.0
Nn5g30618 Nelumbo nucifera HOM05D002156 ORTHO05D002328 1.9e-06 55.5 80 43.8
Solyc02g064580.3 Solanum lycopersicum HOM05D002156 ORTHO05D002328 1.9e-06 55.5 83 39.8
Sopen02g014710 Solanum pennellii HOM05D002156 ORTHO05D002328 1.9e-06 55.5 83 39.8
PGSC0003DMG400003330 Solanum tuberosum HOM05D002156 ORTHO05D002328 1.9e-06 55.5 83 39.8
Lalb_Chr05g0213751 Lupinus albus HOM05D002156 ORTHO05D002328 3.3e-06 54.7 81 44.4
Aqoxy6G02572 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 5.6e-06 53.9 74 45.9
Prupe.6G219400 Prunus persica HOM05D002156 ORTHO05D002328 5.6e-06 53.9 83 39.8
Ca_24680_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 7.4e-06 53.5 81 44.4
Oeu013327.1 Olea europaea HOM05D002156 ORTHO05D002328 7.4e-06 53.5 83 42.2
Sed0011684 Sechium edule HOM05D002156 ORTHO05D002328 7.4e-06 53.5 83 38.6
Atru.chr3.1024 Acer truncatum HOM05D002156 ORTHO05D002328 9.6e-06 53.1 83 41.0
arahy.Tifrunner.gnm1.ann1.DXU8TV Arachis hypogaea HOM05D002156 ORTHO05D002328 9.6e-06 53.1 81 43.2
Nitab4.5_0000036g0110 Nicotiana tabacum HOM05D002156 ORTHO05D002328 9.6e-06 53.1 83 38.6


User provided reference genes

Program Settings