Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040282 Camellia sinensis var. sinensis HOM05D029072 ORTHO05D109013 7.3e-37 156.8 82 100.0
CSS0030243 Camellia sinensis var. sinensis HOM05D029072 ORTHO05D111169 4.9e-17 90.9 77 64.9
CSS0044248 Camellia sinensis var. sinensis HOM05D029072 ORTHO05D110206 4.9e-17 90.9 77 64.9
CSS0036412 Camellia sinensis var. sinensis HOM05D029072 ORTHO05D017719 6.5e-17 90.5 77 63.6
CSS0028842 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.9e-14 81.3 55 76.4
CSS0021054 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-13 79.7 55 74.5
Sabra18G0003100 Salix brachista HOM05D000002 ORTHO05D000001 1.4e-08 62.8 52 57.7
TPR.G17816 Trifolium pratense HOM05D000002 ORTHO05D000001 2.5e-08 62.0 53 50.9
RcHm_v2.0_Chr5g0074721 Rosa chinensis HOM05D000002 ORTHO05D000001 4.2e-08 61.2 68 48.5
RcHm_v2.0_Chr7g0210861 Rosa chinensis HOM05D000002 ORTHO05D000001 7.1e-08 60.5 68 50.0
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.6e-07 59.3 53 52.8
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.6e-07 59.3 56 51.8
Atru.chr11.512 Acer truncatum HOM05D000002 ORTHO05D000001 6.1e-07 57.4 56 48.2
Sabra10G0083300 Salix brachista HOM05D000002 ORTHO05D000001 6.1e-07 57.4 56 51.8
Sabra14G0040800 Salix brachista HOM05D000002 ORTHO05D000001 6.1e-07 57.4 56 51.8
TPR.G14102 Trifolium pratense HOM05D000002 ORTHO05D000001 6.1e-07 57.4 53 49.1
CSS0044431 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 56.2 56 50.0
PSO063G3726 Papaver somniferum HOM05D000002 ORTHO05D000001 1.3e-06 56.2 52 50.0
PSO357G0459 Papaver somniferum HOM05D000002 ORTHO05D000001 1.3e-06 56.2 53 45.3
ECA246G3662 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-06 55.8 51 52.9
FvH4_6g11491 Fragaria vesca HOM05D000002 ORTHO05D000001 1.8e-06 55.8 56 50.0
FvH4_7g19191 Fragaria vesca HOM05D000002 ORTHO05D000001 1.8e-06 55.8 56 50.0
PSO063G6197 Papaver somniferum HOM05D000002 ORTHO05D000001 1.8e-06 55.8 55 52.7
PSO380G0004 Papaver somniferum HOM05D000002 ORTHO05D000001 1.8e-06 55.8 55 50.9
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 56 44.6
TPR.G14261 Trifolium pratense HOM05D000002 ORTHO05D000001 1.8e-06 55.8 50 50.0
TPR.G9239 Trifolium pratense HOM05D000002 ORTHO05D000001 1.8e-06 55.8 53 49.1
Atru.chr5.2227 Acer truncatum HOM05D000002 ORTHO05D000001 2.3e-06 55.5 56 48.2
ECA234G0371 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-06 55.5 56 48.2
PSO210G2560 Papaver somniferum HOM05D000002 ORTHO05D000001 2.3e-06 55.5 55 54.5
Sabra01G0104900 Salix brachista HOM05D003584 ORTHO05D004148 2.3e-06 55.5 53 52.8
Sabra12G0005300 Salix brachista HOM05D000002 ORTHO05D000001 2.3e-06 55.5 68 44.1
Atru.chr3.2937 Acer truncatum HOM05D000002 ORTHO05D000001 3.0e-06 55.1 56 48.2
HanXRQChr09g0254161 Helianthus annuus HOM05D000002 ORTHO05D000001 3.0e-06 55.1 56 53.6
PSO421G0438 Papaver somniferum HOM05D000002 ORTHO05D000001 3.0e-06 55.1 55 50.9
PSO421G0740 Papaver somniferum HOM05D000002 ORTHO05D000001 3.0e-06 55.1 55 50.9
PSO541G0100 Papaver somniferum HOM05D000002 ORTHO05D000001 3.0e-06 55.1 55 50.9
RcHm_v2.0_Chr7g0182281 Rosa chinensis HOM05D000002 ORTHO05D000001 3.0e-06 55.1 56 50.0
TPR.G21983 Trifolium pratense HOM05D000002 ORTHO05D000001 3.0e-06 55.1 55 41.8
C06p33620 Brassica napus HOM05D000002 ORTHO05D000117 3.9e-06 54.7 53 52.8
ECA233G0266 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-06 54.7 52 51.9
ECA247G0128 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-06 54.7 74 43.2
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 3.9e-06 54.7 71 42.3
PSO421G0308 Papaver somniferum HOM05D000002 ORTHO05D000001 3.9e-06 54.7 55 50.9
RcHm_v2.0_Chr1g0350631 Rosa chinensis HOM05D000002 ORTHO05D000001 3.9e-06 54.7 56 46.4
Sabra05G0007300 Salix brachista HOM05D000002 ORTHO05D000001 3.9e-06 54.7 66 42.4
THA.LOC109116555 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.9e-06 54.7 48 56.2
Atru.chr11.149 Acer truncatum HOM05D000002 ORTHO05D000001 5.1e-06 54.3 53 47.2
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 5.1e-06 54.3 55 50.9
CSS0000520 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.1e-06 54.3 56 50.0
PSO566G0085 Papaver somniferum HOM05D000002 ORTHO05D000001 5.1e-06 54.3 50 54.0
PGR102G2344 Punica granatum HOM05D000002 ORTHO05D000001 5.1e-06 54.3 55 52.7
TPR.G20899 Trifolium pratense HOM05D000002 ORTHO05D000001 5.1e-06 54.3 50 46.0
FvH4_5g11221 Fragaria vesca HOM05D000002 ORTHO05D000001 6.7e-06 53.9 56 48.2
PSO832G0028 Papaver somniferum HOM05D000002 ORTHO05D000001 6.7e-06 53.9 51 51.0
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 6.7e-06 53.9 56 42.9
RcHm_v2.0_Chr5g0078261 Rosa chinensis HOM05D000002 ORTHO05D000001 6.7e-06 53.9 56 42.9
Solyc10g052515.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 6.7e-06 53.9 50 48.0
Ciclev10010190m.g Citrus clementina HOM05D003946 ORTHO05D004485 8.7e-06 53.5 53 49.1
ECA238G4167 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.7e-06 53.5 56 48.2
HanXRQChr03g0093111 Helianthus annuus HOM05D000002 ORTHO05D000001 8.7e-06 53.5 55 50.9
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 8.7e-06 53.5 71 46.5
PSO675G1454 Papaver somniferum HOM05D000002 ORTHO05D000001 8.7e-06 53.5 50 56.0
PSO675G3260 Papaver somniferum HOM05D000002 ORTHO05D000001 8.7e-06 53.5 63 46.0
PSO724G0209 Papaver somniferum HOM05D000002 ORTHO05D000001 8.7e-06 53.5 54 50.0


User provided reference genes

Program Settings