Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040255 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D014293 2.1e-217 758.8 407 100.0
CSS0014452 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D014293 5.5e-117 425.2 394 66.8
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.9e-110 402.9 394 61.9
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.1e-109 401.0 394 61.7
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 4.5e-87 325.9 394 57.4
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 1.1e-85 321.2 331 62.5
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 4.4e-66 256.1 372 50.8
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.2e-58 231.5 402 45.5
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.5e-58 231.1 395 45.6
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.9e-53 214.2 392 43.4
Actinidia03718 Actinidia chinensis HOM05D000550 ORTHO05D000400 2.1e-52 210.7 352 48.9
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 3.9e-46 189.9 256 54.3
Hma1.2p1_0058F.1_g032355 Hydrangea macrophylla HOM05D001944 ORTHO05D014293 1.9e-45 187.6 304 47.0
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 1.7e-41 174.5 217 54.4
vmacro14420 Vaccinium macrocarpon HOM05D001944 ORTHO05D014293 1.3e-36 158.3 181 57.5
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.2e-33 147.5 398 37.9
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.4e-32 144.8 398 34.9
Haze_23776 Corylus avellana HOM05D001944 ORTHO05D014293 9.3e-32 142.1 395 36.7
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.6e-31 141.4 408 37.5
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 3.5e-31 140.2 406 36.0
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 2.5e-29 134.0 404 35.4
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.6e-28 130.2 397 33.8
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 5.8e-26 122.9 280 38.9
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.7e-25 121.3 366 36.3
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 4.9e-25 119.8 408 34.1
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.7e-23 114.0 405 35.6
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 1.0e-22 112.1 425 32.0
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.3e-22 111.7 367 34.9
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.3e-22 111.7 207 46.9
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 8.7e-22 109.0 429 32.2
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 5.6e-21 106.3 418 31.1
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 5.6e-21 106.3 188 47.9
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 5.6e-21 106.3 188 47.9
Cpa.g.sc311.5 Carica papaya HOM05D001944 ORTHO05D014293 9.6e-21 105.5 397 32.0
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.3e-20 105.1 393 33.1
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 6.2e-20 102.8 399 33.8
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.1e-19 102.1 188 47.3
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.1e-19 102.1 373 33.0
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 1.4e-19 101.7 431 30.9
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.4e-19 101.7 188 47.3
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.8e-19 101.3 323 37.8
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 4.0e-19 100.1 410 32.4
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.3e-17 95.1 253 39.5
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.3e-17 95.1 253 38.7
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 2.2e-17 94.4 393 30.5
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 3.8e-17 93.6 242 40.9
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 1.4e-16 91.7 188 45.2
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 1.4e-16 91.7 175 45.1
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 2.5e-16 90.9 308 35.1
Sed0006438 Sechium edule HOM05D001944 ORTHO05D002405 4.2e-16 90.1 417 30.0
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 9.3e-16 89.0 391 29.2
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.2e-15 88.6 167 45.5
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.2e-15 88.6 323 36.8
Rhsim03G0086900 Rhododendron simsii HOM05D001944 ORTHO05D014293 1.6e-15 88.2 248 34.7
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 3.5e-15 87.0 258 38.0
QL01p026747 Quercus lobata HOM05D001944 ORTHO05D002405 4.6e-15 86.7 394 30.7
Lj1P201T10 Lonicera japonica HOM05D001944 ORTHO05D014293 2.3e-14 84.3 178 44.9
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 5.1e-14 83.2 413 31.0
Hma1.2p1_0058F.1_g032350 Hydrangea macrophylla HOM05D001944 ORTHO05D011318 8.7e-14 82.4 263 33.5
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 1.1e-13 82.0 256 37.1
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 7.4e-13 79.3 213 39.0
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 7.4e-13 79.3 405 30.6
Lj8C65T10 Lonicera japonica HOM05D001944 ORTHO05D014293 1.3e-12 78.6 118 48.3
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 1.3e-12 78.6 181 44.8
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.1e-11 75.5 415 28.7
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.1e-11 75.5 374 31.3
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.1e-11 73.6 374 31.0
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 3.4e-10 70.5 400 30.2
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.5e-10 70.1 374 30.5
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.5e-10 70.1 186 39.8
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 4.5e-10 70.1 269 32.3
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 1.7e-09 68.2 168 41.1
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 5.0e-09 66.6 179 35.8
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 5.0e-09 66.6 186 38.2
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 1.1e-08 65.5 186 37.6
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.5e-08 64.3 118 44.9
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 4.2e-08 63.5 397 29.7
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 5.5e-08 63.2 294 31.6
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 5.5e-08 63.2 149 38.9
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 9.3e-08 62.4 114 43.9
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 9.3e-08 62.4 207 37.7
VMungo1080G0782 Vigna mungo HOM05D001944 ORTHO05D002405 3.5e-07 60.5 172 40.1
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 6.1e-07 59.7 397 27.2
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 7.9e-07 59.3 187 39.0
Oeu002984.1 Olea europaea HOM05D001944 ORTHO05D002405 1.0e-06 58.9 435 26.0
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 6.7e-06 56.2 384 30.7
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 8.7e-06 55.8 174 35.6


User provided reference genes

Program Settings