Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040247 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 3.0e-63 245.0 120 100.0
CSS0012389 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 3.9e-63 244.6 120 99.2
CSS0025758 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 3.9e-63 244.6 120 99.2
CSS0033966 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 3.9e-63 244.6 120 99.2
CSS0031452 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.1e-62 243.0 120 98.3
CSS0032073 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.1e-62 243.0 120 98.3
CSS0000553 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.5e-62 242.7 120 98.3
CSS0025980 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.5e-62 242.7 120 98.3
CSS0026006 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 1.7e-50 202.6 120 86.7
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 1.7e-34 149.4 73 95.9
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 1.2e-32 143.3 94 73.4
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 1.6e-32 142.9 73 93.2
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 89.0
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 89.0
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 89.0
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 89.0
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 90.4
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 89.0
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 90.4
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 2.7e-32 142.1 73 90.4
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 3.6e-32 141.7 73 90.4
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 3.6e-32 141.7 73 89.0
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 4.7e-32 141.4 73 90.4
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 4.7e-32 141.4 73 90.4
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 8.0e-32 140.6 73 91.8
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 1.0e-31 140.2 73 90.4
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 1.4e-31 139.8 73 89.0
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.8e-31 139.4 73 90.4
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 1.8e-31 139.4 72 90.3
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 1.8e-31 139.4 73 87.7
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 2.3e-31 139.0 73 87.7
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.3e-31 139.0 73 86.3
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 2.3e-31 139.0 73 89.0
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 3.0e-31 138.7 73 87.7
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 89.0
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 87.7
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 87.7
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 86.3
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 86.3
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 86.3
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 3.9e-31 138.3 73 87.7
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 5.2e-31 137.9 73 86.3
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 5.2e-31 137.9 73 87.7
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 5.2e-31 137.9 73 87.7
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 5.2e-31 137.9 73 86.3
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 5.2e-31 137.9 73 86.3
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 8.8e-31 137.1 73 84.9
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 8.8e-31 137.1 73 87.7
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 8.8e-31 137.1 73 87.7
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 1.1e-30 136.7 73 89.0
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 1.1e-30 136.7 73 86.3
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 1.1e-30 136.7 73 87.7
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 1.1e-30 136.7 73 87.7
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 1.1e-30 136.7 73 84.9
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 1.5e-30 136.3 73 84.9
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 1.5e-30 136.3 73 86.3
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 2.0e-30 136.0 73 86.3
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 2.0e-30 136.0 73 83.6
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 3.3e-30 135.2 73 86.3
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 3.3e-30 135.2 73 83.6
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 3.3e-30 135.2 73 84.9
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 4.4e-30 134.8 73 87.7
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 4.4e-30 134.8 73 84.9
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 4.4e-30 134.8 73 87.7
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 4.4e-30 134.8 73 86.3
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 4.4e-30 134.8 73 84.9
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 5.7e-30 134.4 80 81.2
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 5.7e-30 134.4 73 86.3
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 7.4e-30 134.0 73 87.7
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 7.4e-30 134.0 73 86.3
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 9.7e-30 133.7 73 86.3
Nitab4.5_0000973g0040 Nicotiana tabacum HOM05D000141 ORTHO05D004489 9.7e-30 133.7 73 84.9
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 1.3e-29 133.3 73 83.6
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 1.3e-29 133.3 73 82.2
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 1.3e-29 133.3 73 80.8
Nitab4.5_0011544g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004489 1.7e-29 132.9 73 84.9
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 2.2e-29 132.5 73 84.9
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 2.8e-29 132.1 73 84.9
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 3.7e-29 131.7 73 84.9
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 3.7e-29 131.7 73 84.9
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 4.8e-29 131.3 73 82.2
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 6.3e-29 131.0 73 82.2
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 8.2e-29 130.6 73 84.9
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 8.2e-29 130.6 73 84.9
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 8.2e-29 130.6 73 84.9
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 8.2e-29 130.6 73 84.9
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 8.2e-29 130.6 73 83.6
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.1e-28 130.2 73 83.6
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 1.8e-28 129.4 73 80.8
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 1.8e-28 129.4 73 80.8
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 1.8e-28 129.4 73 80.8
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 2.4e-28 129.0 73 80.8
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 2.4e-28 129.0 73 82.2
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 2.4e-28 129.0 73 84.9
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 2.4e-28 129.0 73 84.9
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 3.1e-28 128.6 73 80.8
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 4.1e-28 128.3 73 83.6
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 5.3e-28 127.9 74 79.7
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 7.0e-28 127.5 73 82.2
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 7.0e-28 127.5 73 82.2
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 7.0e-28 127.5 73 82.2
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 7.0e-28 127.5 73 82.2
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 7.0e-28 127.5 73 80.8
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 9.1e-28 127.1 73 79.5
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 9.1e-28 127.1 73 80.8
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 1.2e-27 126.7 73 82.2
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 1.6e-27 126.3 74 79.7
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 1.6e-27 126.3 73 80.8
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 1.6e-27 126.3 72 79.2
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 1.6e-27 126.3 73 82.2
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 2.0e-27 125.9 73 80.8
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 2.6e-27 125.6 73 79.5
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 3.5e-27 125.2 73 79.5
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 3.5e-27 125.2 73 79.5
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 4.5e-27 124.8 73 79.5
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 5.9e-27 124.4 73 80.8
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 5.9e-27 124.4 73 80.8
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 5.9e-27 124.4 73 78.1
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 7.7e-27 124.0 72 80.6
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 7.7e-27 124.0 72 77.8
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.7e-26 122.9 73 78.1
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 1.7e-26 122.9 73 82.2
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 2.9e-26 122.1 73 75.3
Sed0022500 Sechium edule HOM05D000141 ORTHO05D004489 2.9e-26 122.1 73 75.3
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 5.0e-26 121.3 74 79.7
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 5.0e-26 121.3 74 79.7
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 8.5e-26 120.6 74 78.4
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 8.5e-26 120.6 74 78.4
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 8.5e-26 120.6 74 78.4
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.2e-24 116.7 73 75.3
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 3.6e-24 115.2 73 69.9
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 4.7e-24 114.8 73 67.1
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 4.7e-24 114.8 73 67.1
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 8.0e-24 114.0 73 72.6
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 1.8e-23 112.8 73 71.2
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 3.0e-23 112.1 73 75.3
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 5.2e-23 111.3 73 71.2
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 2.6e-22 109.0 73 69.9
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 9.7e-22 107.1 73 67.1
SHI32497 Sapria himalayana HOM05D000141 ORTHO05D016149 9.7e-22 107.1 73 67.1
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.7e-21 106.3 73 65.8
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 2.8e-21 105.5 55 87.3
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 2.8e-21 105.5 55 87.3
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 5.3e-20 101.3 74 64.9
Thecc.07G194700 Theobroma cacao HOM05D000141 ORTHO05D016149 3.2e-17 92.0 54 77.8
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 1.4e-15 86.7 44 90.9
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 9.8e-14 80.5 73 58.9
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 1.0e-10 70.5 93 45.2
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 2.3e-07 59.3 73 41.1


User provided reference genes

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