Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.5e-39 165.6 78 100.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.6e-36 155.6 78 96.2
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.2e-34 147.5 78 89.7
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.4e-23 110.9 77 64.9
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 9.8e-23 109.8 78 70.5
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 6.3e-22 107.1 77 64.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 4.2e-18 94.4 78 61.5
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 9.5e-18 93.2 77 57.1
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 4.0e-16 87.8 79 51.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.2e-15 86.3 79 54.4
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 2.6e-15 85.1 74 54.1
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 3.4e-15 84.7 73 60.3
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 4.4e-15 84.3 77 54.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 4.4e-15 84.3 77 54.5
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 5.7e-15 84.0 73 58.9
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.5e-15 83.6 51 66.7
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 7.5e-15 83.6 70 52.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 9.8e-15 83.2 73 58.9
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.7e-14 82.4 73 57.5
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 3.7e-14 81.3 79 51.9
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 3.7e-14 81.3 74 52.7
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.7e-14 81.3 77 54.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 4.9e-14 80.9 68 52.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 4.9e-14 80.9 74 48.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 6.3e-14 80.5 79 48.1
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.3e-14 80.1 73 57.5
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-13 79.7 75 57.3
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.4e-13 79.3 72 52.8
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-13 79.3 69 55.1
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.4e-13 79.3 75 56.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.8e-13 79.0 80 53.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.8e-13 79.0 80 53.8
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 1.8e-13 79.0 77 44.2
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.8e-13 79.0 62 62.9
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.4e-13 78.6 68 50.0
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.4e-13 78.6 79 51.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 4.1e-13 77.8 73 45.2
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 4.1e-13 77.8 70 51.4
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 5.4e-13 77.4 74 55.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.4e-13 77.4 74 55.4
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 5.4e-13 77.4 77 50.6
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 9.2e-13 76.6 74 52.7
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.2e-12 76.3 68 52.9
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.6e-12 75.9 77 48.1
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.6e-12 75.9 77 48.1
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.6e-12 75.9 65 50.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 2.0e-12 75.5 70 50.0
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 3.5e-12 74.7 73 50.7
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 3.5e-12 74.7 69 49.3
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 5.9e-12 73.9 69 49.3
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 7.8e-12 73.6 65 55.4
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.0e-11 73.2 76 51.3
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.0e-11 73.2 49 61.2
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-11 73.2 58 56.9
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.3e-11 72.8 75 49.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.3e-11 72.8 47 63.8
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.3e-11 72.0 75 53.3
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 2.3e-11 72.0 72 55.6
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 2.9e-11 71.6 72 45.8
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.9e-11 71.6 80 46.2
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 2.9e-11 71.6 72 45.8
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 2.9e-11 71.6 78 48.7
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.9e-11 71.6 70 50.0
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.9e-11 71.6 70 50.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 3.9e-11 71.2 78 46.2
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 5.0e-11 70.9 77 41.6
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 5.0e-11 70.9 68 50.0
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 6.6e-11 70.5 69 44.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 8.6e-11 70.1 70 44.3
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 1.1e-10 69.7 50 58.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.5e-10 69.3 49 61.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.9e-10 68.9 70 42.9
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.9e-10 68.9 79 48.1
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 2.5e-10 68.6 75 45.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 2.5e-10 68.6 70 47.1
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.5e-10 68.6 68 55.9
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 2.5e-10 68.6 79 48.1
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.5e-10 68.6 80 47.5
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.3e-10 68.2 69 43.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 3.3e-10 68.2 70 47.1
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.3e-10 67.8 71 43.7
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.3e-10 67.0 79 46.8
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.2e-09 66.2 72 43.1
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.2e-09 66.2 72 43.1
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.2e-09 66.2 72 43.1
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.2e-09 66.2 76 40.8
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.6e-09 65.9 72 43.1
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.1e-09 65.5 49 61.2
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-09 65.1 77 45.5
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.6e-09 64.7 59 49.2
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.6e-09 64.7 60 46.7
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.7e-09 64.3 80 47.5
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 8.0e-09 63.5 80 45.0
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 2.3e-08 62.0 67 46.3
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.1e-08 61.6 71 40.8
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.0e-08 61.2 49 51.0
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 8.9e-08 60.1 65 50.8
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.2e-07 59.7 79 41.8
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 1.2e-07 59.7 71 46.5
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.5e-07 59.3 79 41.8
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.0e-07 58.9 49 49.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.4e-07 58.2 64 50.0
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 3.4e-07 58.2 65 43.1
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 4.4e-07 57.8 50 46.0
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.9e-06 55.1 44 54.5
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 4.9e-06 54.3 76 38.2
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 6.4e-06 53.9 78 42.3
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 6.4e-06 53.9 74 41.9
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 8.3e-06 53.5 70 41.4


User provided reference genes

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