Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 0.0e+00 2654.0 1341 100.0
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 0.0e+00 2644.4 1341 99.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 0.0e+00 1612.8 1347 66.0
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 0.0e+00 1421.8 1387 61.4
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 0.0e+00 1232.6 1368 55.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.9e-306 1054.3 1374 50.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 8.3e-279 964.5 1248 49.4
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 8.9e-273 944.5 1332 46.8
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.5e-272 943.7 1402 46.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.7e-260 903.7 1388 45.0
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.2e-258 897.5 1373 44.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 4.7e-258 895.6 1401 45.8
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.3e-257 893.3 1288 45.6
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 4.4e-256 889.0 1302 46.4
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.7e-255 887.1 1335 44.3
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.7e-250 869.0 1321 44.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.0e-249 865.9 1387 43.9
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.9e-246 857.1 1397 42.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.2e-242 844.3 1403 42.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 9.6e-235 818.1 1380 43.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.8e-234 815.8 1331 42.9
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.4e-233 813.5 1379 43.4
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.8e-232 808.9 1415 41.6
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 4.2e-230 802.7 1448 41.8
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.7e-229 800.0 1364 42.3
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 4.6e-229 799.3 1435 42.6
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.0e-229 798.9 1384 43.1
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 1.7e-228 797.3 1448 41.4
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.1e-227 794.7 1321 42.8
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.3e-227 793.1 1340 43.2
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 7.3e-227 792.0 1341 43.5
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.1e-226 790.4 1435 42.4
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.6e-224 783.5 1380 42.5
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.1e-221 773.9 1334 42.4
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 5.1e-220 769.2 1446 41.7
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.5e-219 767.7 1341 42.4
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 6.2e-218 762.3 1375 41.0
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.0e-215 755.0 1485 38.7
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 4.9e-215 752.7 1379 41.3
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.0e-212 745.0 1343 41.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.1e-209 734.9 1380 41.1
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.8e-209 734.2 1355 41.3
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.9e-209 732.3 1381 41.0
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.4e-208 729.9 1381 41.0
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.4e-208 729.9 1373 39.6
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.3e-207 728.0 1340 40.4
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.7e-207 727.6 1378 41.1
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.5e-205 719.9 1440 40.3
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.8e-204 717.6 1442 39.9
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 8.7e-204 715.3 1390 38.8
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.4e-200 703.4 1378 40.8
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 7.7e-200 702.2 1442 40.8
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.4e-196 691.4 1391 39.6
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 6.1e-189 666.0 957 48.6
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 6.1e-189 666.0 1454 38.6
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.9e-188 663.3 1313 39.2
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.8e-183 646.7 1376 38.4
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 5.5e-182 642.9 1452 36.6
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.8e-180 637.9 1388 37.4
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-178 630.9 1372 38.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 4.5e-176 623.2 1138 43.3
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.2e-175 620.9 1404 37.1
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 3.2e-174 617.1 1372 36.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.8e-148 531.6 576 53.1
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.2e-147 528.9 1458 34.0
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.9e-145 521.5 1382 35.2
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.9e-142 511.5 1406 33.7
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.3e-135 488.0 1150 36.2
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.3e-134 484.2 953 38.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.8e-133 481.1 1297 33.4
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.3e-132 478.0 1431 32.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 7.8e-120 436.4 1257 34.4
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.0e-115 421.8 1245 33.5
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.0e-111 409.5 1128 34.8
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.1e-108 399.4 1458 30.1
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.7e-104 384.8 291 65.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 8.4e-98 363.2 968 35.5
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 5.1e-95 354.0 1073 33.2
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.1e-87 327.4 902 32.9
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 9.7e-86 323.2 907 34.4
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.7e-80 305.1 1230 29.7
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.6e-80 304.7 679 37.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.5e-78 299.3 684 36.8
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 3.7e-77 294.7 1387 29.1
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.1e-76 291.6 830 32.3
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.4e-71 276.2 787 33.5
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 6.7e-71 273.9 682 35.9
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.5e-70 272.7 1386 28.8
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-63 250.0 647 34.3
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-63 249.2 318 45.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.7e-62 244.2 404 40.1
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 9.7e-62 243.4 1194 27.4
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.5e-59 234.6 1386 27.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.2e-58 232.3 1333 27.0
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 9.4e-57 226.9 1491 26.9
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 9.4e-57 226.9 1131 27.9
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.5e-54 219.5 1382 26.8
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 6.3e-53 214.2 1394 27.0
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.4e-52 212.2 1088 26.8
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 7.0e-52 210.7 339 45.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 9.5e-49 200.3 367 39.8
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-47 196.4 391 40.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.8e-44 186.0 1499 24.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-42 179.9 482 33.4
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.7e-42 179.5 585 32.0
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 3.3e-41 175.3 487 32.9
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 1.8e-39 169.5 677 30.6
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 5.2e-39 167.9 1090 26.6
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-36 159.5 370 35.7
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 4.1e-36 158.3 875 26.9
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-34 153.7 223 45.7
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.7e-34 152.9 423 33.3
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 8.6e-34 150.6 1092 25.3
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 8.6e-34 150.6 1340 24.9
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 3.3e-33 148.7 1337 25.2
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-31 143.7 1353 24.5
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.0e-31 141.7 478 31.8
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 8.9e-31 140.6 451 31.5
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.7e-29 136.3 1501 25.0
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.2e-29 136.0 797 29.2
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.0e-27 127.9 192 44.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.3e-26 126.7 509 30.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.0e-26 124.8 796 28.1
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.2e-24 120.2 728 27.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.8e-24 119.0 782 28.0
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 4.7e-24 118.2 597 29.1
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.8e-22 111.3 1404 24.3
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-21 109.4 615 25.5
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.9e-20 106.3 142 42.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 2.7e-19 102.4 597 28.0
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-17 96.7 165 38.2
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.8e-16 92.4 89 49.4
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 7.6e-14 84.3 123 42.3
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.9e-13 81.6 1448 23.8
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.4e-12 80.1 544 25.0
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 1.9e-12 79.7 370 29.7
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.2e-12 77.4 389 27.5
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-09 70.5 158 35.4
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.5e-09 69.3 276 30.8
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.3e-09 68.9 46 73.9
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 4.3e-09 68.6 299 31.8
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 5.6e-09 68.2 457 26.7
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 9.6e-09 67.4 161 36.0
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 2.1e-08 66.2 725 25.1
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.7e-08 65.1 43 72.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.7e-08 65.1 43 72.1
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 8.1e-08 64.3 227 33.5
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.1e-07 63.9 345 26.1
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.4e-07 63.5 1472 23.0
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.8e-07 63.2 179 35.8
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-07 62.4 91 45.1
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 3.1e-07 62.4 347 29.4
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 4.0e-07 62.0 407 28.5
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 6.9e-07 61.2 316 25.9
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-06 60.5 496 27.2
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 5.8e-06 58.2 407 29.2
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 7.6e-06 57.8 160 35.0


User provided reference genes

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