Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 4.3e-88 327.8 148 100.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.4e-69 265.0 153 79.7
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 4.5e-69 264.6 148 78.4
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.5e-69 264.6 148 79.1
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.3e-68 263.1 147 80.3
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.4e-67 259.6 150 76.7
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 3.2e-67 258.5 151 78.1
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.6e-66 255.0 153 75.8
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 8.0e-66 253.8 148 77.7
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-65 253.4 152 75.7
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.4e-65 253.1 149 77.2
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 6.7e-65 250.8 153 76.5
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.7e-65 250.8 153 73.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 8.8e-65 250.4 153 76.5
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 9.7e-64 246.9 146 76.0
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.7e-63 246.1 148 75.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 4.8e-63 244.6 148 75.0
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 8.2e-63 243.8 151 73.5
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 5.3e-62 241.1 145 73.8
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 7.0e-62 240.7 148 74.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 9.1e-62 240.4 153 73.9
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.6e-61 238.8 159 69.2
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.6e-61 238.8 139 76.3
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.5e-61 238.4 147 74.8
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 4.5e-61 238.0 148 70.9
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.5e-61 238.0 159 66.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 4.5e-61 238.0 148 71.6
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 7.7e-61 237.3 148 70.9
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.7e-60 236.1 148 69.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.2e-60 235.7 148 70.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.2e-60 235.7 148 71.6
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 2.2e-60 235.7 148 70.3
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.9e-60 235.3 129 80.6
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 2.9e-60 235.3 148 70.9
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.9e-60 235.3 161 66.5
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.9e-60 235.3 147 73.5
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.0e-60 234.6 122 82.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 8.5e-60 233.8 157 68.8
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 8.5e-60 233.8 154 70.8
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.1e-59 233.4 150 71.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.5e-59 232.3 150 69.3
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.2e-59 231.9 155 68.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.2e-59 231.9 154 70.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.2e-59 231.5 148 69.6
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 7.2e-59 230.7 150 68.7
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.1e-58 229.2 148 68.9
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.7e-58 228.8 148 69.6
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.7e-58 228.0 146 69.2
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 4.7e-58 228.0 148 68.9
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 6.1e-58 227.6 162 66.0
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 8.0e-58 227.3 148 68.2
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 8.0e-58 227.3 148 68.2
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.8e-57 226.1 147 67.3
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.8e-57 226.1 148 68.2
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.8e-57 226.1 148 68.2
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 2.3e-57 225.7 169 61.5
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.3e-57 225.7 148 68.2
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.3e-57 225.7 148 68.2
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.3e-57 225.7 148 68.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.0e-57 225.3 159 64.2
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-57 224.9 148 68.9
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 4.0e-57 224.9 148 68.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 5.2e-57 224.6 148 66.9
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 5.2e-57 224.6 145 70.3
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 6.7e-57 224.2 146 68.5
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 8.8e-57 223.8 148 66.9
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.2e-56 223.4 165 63.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.2e-56 223.4 148 66.9
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-56 223.0 148 67.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.6e-56 222.2 148 68.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 3.3e-56 221.9 146 69.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 67.6
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 68.9
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 68.9
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.4e-56 221.5 145 69.0
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 7.5e-56 220.7 142 69.7
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.7e-55 219.5 148 66.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.7e-55 219.5 148 67.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 3.7e-55 218.4 148 66.2
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.3e-55 217.6 149 66.4
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 6.3e-55 217.6 148 66.2
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.1e-54 216.9 149 66.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.1e-54 216.9 149 66.4
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.4e-54 216.5 149 65.8
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.8e-54 216.1 148 64.9
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.1e-54 215.3 148 64.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.3e-54 214.5 146 67.8
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.1e-54 213.8 146 67.8
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 9.1e-54 213.8 112 83.0
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.0e-53 212.6 148 65.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.0e-53 212.6 148 62.8
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.7e-53 212.2 146 67.1
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.5e-53 211.8 125 73.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.0e-52 210.3 118 77.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.0e-52 210.3 148 64.2
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.2e-52 209.1 150 64.0
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.1e-51 206.8 122 75.4
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 3.2e-51 205.3 159 63.5
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 7.2e-51 204.1 112 79.5
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.2e-50 203.4 148 62.8
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.6e-50 203.0 145 63.4
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.6e-50 201.8 155 60.6
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.8e-49 199.5 143 62.2
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.0e-49 198.4 156 61.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.0e-49 198.4 156 61.5
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.2e-49 198.0 143 62.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-48 196.4 146 60.3
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.3e-47 193.4 124 70.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-47 193.0 142 60.6
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.9e-43 179.5 174 52.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.8e-41 172.9 172 50.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.4e-38 163.3 116 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.7e-36 156.4 130 51.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.5e-35 153.3 145 50.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.2e-34 150.2 121 57.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.0e-33 147.1 141 50.4
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.4e-31 137.9 86 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 8.3e-31 137.5 144 45.8
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 7.8e-29 131.0 72 77.8
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 5.6e-27 124.8 59 89.8
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 2.8e-26 122.5 58 87.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 8.9e-25 117.5 126 50.0
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-22 110.5 81 63.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 7.0e-22 107.8 80 61.2
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-20 104.0 80 61.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 8.6e-20 100.9 76 63.2
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.9e-19 99.8 111 45.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.3e-19 99.0 75 65.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-17 93.2 56 69.6
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 6.4e-15 84.7 103 42.7
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.9e-12 75.5 40 77.5
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-11 73.6 113 37.2
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 2.1e-10 69.7 55 61.8
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 8.1e-10 67.8 92 39.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.2e-08 63.9 55 50.9
Hma1.2p1_1396F.1_g280590 Hydrangea macrophylla HOM05D005538 ORTHO05D228224 2.0e-08 63.2 81 45.7
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.4e-08 62.4 54 51.9
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.4e-08 62.4 54 51.9
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 4.4e-08 62.0 100 33.0
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 5.8e-08 61.6 51 60.8
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 7.6e-08 61.2 60 46.7
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.4e-07 57.8 55 47.3


User provided reference genes

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