Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 1.4e-119 433.0 223 100.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-14 84.3 69 65.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-14 84.3 69 65.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.0e-13 79.3 44 81.8
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.2e-12 77.8 45 80.0
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.6e-12 76.6 45 77.8
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.4e-12 76.3 65 60.0
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 2.9e-11 73.2 71 52.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 3.8e-11 72.8 44 70.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 3.8e-11 72.8 44 70.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 8.4e-11 71.6 47 70.2
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 8.4e-11 71.6 47 70.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 8.4e-11 71.6 47 70.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 8.4e-11 71.6 47 70.2
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.4e-10 70.9 69 52.2
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.9e-10 70.5 44 68.2
TPR.G18787 Trifolium pratense HOM05D002352 ORTHO05D014906 1.9e-10 70.5 53 56.6
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.5e-10 70.1 70 54.3
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.5e-10 70.1 44 68.2
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.2e-10 69.7 71 50.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 3.2e-10 69.7 44 70.5
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 3.2e-10 69.7 44 68.2
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 3.2e-10 69.7 71 50.7
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 3.2e-10 69.7 71 50.7
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 4.2e-10 69.3 44 70.5
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 4.2e-10 69.3 70 51.4
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 5.5e-10 68.9 44 65.9
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 7.1e-10 68.6 44 70.5
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 9.3e-10 68.2 70 51.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 9.3e-10 68.2 44 68.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.2e-09 67.8 44 65.9
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.2e-09 67.8 44 65.9
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.2e-09 67.8 44 68.2
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.6e-09 67.4 44 68.2
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.6e-09 67.4 47 63.8
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.6e-09 67.4 44 70.5
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.6e-09 67.4 44 65.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.6e-09 67.4 47 57.4
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.6e-09 67.4 71 47.9
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-09 67.0 41 87.8
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-09 67.0 41 87.8
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.1e-09 67.0 44 65.9
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 2.1e-09 67.0 44 65.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.1e-09 67.0 70 50.0
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.7e-09 66.6 44 63.6
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.7e-09 66.6 44 65.9
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.7e-09 66.6 69 46.4
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.7e-09 66.6 70 51.4
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.7e-09 66.6 47 63.8
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.7e-09 66.6 44 63.6
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.7e-09 66.6 44 68.2
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.5e-09 66.2 73 47.9
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 3.5e-09 66.2 73 47.9
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 3.5e-09 66.2 73 47.9
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 3.5e-09 66.2 73 47.9
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.5e-09 66.2 47 59.6
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.5e-09 66.2 47 59.6
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.5e-09 66.2 70 50.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 3.5e-09 66.2 70 51.4
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 3.5e-09 66.2 44 65.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.6e-09 65.9 73 46.6
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 4.6e-09 65.9 73 46.6
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 4.6e-09 65.9 73 46.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 4.6e-09 65.9 73 46.6
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 4.6e-09 65.9 44 63.6
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.6e-09 65.9 44 63.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 4.6e-09 65.9 73 47.9
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 4.6e-09 65.9 37 78.4
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.6e-09 65.9 38 73.7
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 46.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 46.6
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 46.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 46.6
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 46.6
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 6.0e-09 65.5 44 63.6
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.0e-09 65.5 73 47.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 7.9e-09 65.1 70 48.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 7.9e-09 65.1 73 47.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 7.9e-09 65.1 44 61.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 7.9e-09 65.1 69 50.7
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.0e-08 64.7 62 58.1
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 1.0e-08 64.7 44 61.4
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.0e-08 64.7 44 63.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.3e-08 64.3 70 47.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.3e-08 64.3 70 50.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.3e-08 64.3 73 47.9
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.3e-08 64.3 44 61.4
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.3e-08 64.3 71 49.3
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-08 64.3 71 49.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-08 64.3 71 49.3
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 1.3e-08 64.3 38 73.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.8e-08 63.9 44 63.6
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.8e-08 63.9 41 82.9
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.8e-08 63.9 41 82.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.3e-08 63.5 69 44.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 2.3e-08 63.5 44 65.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.3e-08 63.5 44 65.9
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.3e-08 63.5 71 47.9
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.0e-08 63.2 72 43.1
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.0e-08 63.2 41 82.9
MD07G1271400 Malus domestica HOM05D002352 ORTHO05D016619 3.0e-08 63.2 91 41.8
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-08 63.2 71 47.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-08 63.2 71 47.9
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.9e-08 62.8 44 61.4
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 5.1e-08 62.4 44 63.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.1e-08 62.4 44 61.4
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 6.7e-08 62.0 62 54.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 6.7e-08 62.0 72 41.7
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.7e-08 61.6 32 96.9
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 8.7e-08 61.6 41 80.5
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.1e-07 61.2 33 93.9
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-07 61.2 41 78.0
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-07 61.2 41 78.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.1e-07 61.2 63 46.0
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.1e-07 61.2 71 46.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.1e-07 61.2 70 48.6
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.5e-07 60.8 41 78.0
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.5e-07 60.8 41 78.0
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 1.5e-07 60.8 62 53.2
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 61.4
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 61.4
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 61.4
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 61.4
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 63.6
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.5e-07 60.8 44 61.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.9e-07 60.5 44 61.4
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 1.9e-07 60.5 41 78.0
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 2.5e-07 60.1 41 75.6
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.5e-07 60.1 38 68.4
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 2.5e-07 60.1 41 78.0
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 2.5e-07 60.1 41 78.0
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 2.5e-07 60.1 41 78.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 3.3e-07 59.7 41 75.6
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 3.3e-07 59.7 41 75.6
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 3.3e-07 59.7 45 57.8
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.3e-07 59.7 62 51.6
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 4.3e-07 59.3 41 78.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 4.3e-07 59.3 41 78.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 4.3e-07 59.3 62 51.6
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 4.3e-07 59.3 41 78.0
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.3e-07 59.3 37 70.3
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 4.3e-07 59.3 62 51.6
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 4.3e-07 59.3 41 78.0
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 4.3e-07 59.3 41 75.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.7e-07 58.9 38 57.9
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.7e-07 58.9 32 90.6
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.7e-07 58.9 44 59.1
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 5.7e-07 58.9 41 75.6
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 5.7e-07 58.9 41 75.6
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 5.7e-07 58.9 64 50.0
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 7.4e-07 58.5 62 51.6
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 9.6e-07 58.2 41 73.2
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 73.2
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 75.6
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 73.2
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 73.2
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 73.2
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 73.2
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.3e-06 57.8 41 75.6
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.3e-06 57.8 50 50.0
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.6e-06 57.4 41 75.6
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.6e-06 57.4 41 75.6
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 2.1e-06 57.0 41 75.6
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.1e-06 57.0 41 75.6
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 2.1e-06 57.0 41 73.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.1e-06 57.0 37 64.9
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 2.1e-06 57.0 41 75.6
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 2.8e-06 56.6 41 73.2
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 2.8e-06 56.6 41 73.2
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 2.8e-06 56.6 41 73.2
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 2.8e-06 56.6 41 73.2
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 2.8e-06 56.6 41 73.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.8e-06 56.6 37 64.9
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 3.7e-06 56.2 41 73.2
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 4.8e-06 55.8 41 73.2
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 4.8e-06 55.8 41 70.7
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.8e-06 55.8 44 50.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.3e-06 55.5 34 70.6
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.3e-06 55.5 45 46.7
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 6.3e-06 55.5 41 70.7
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.3e-06 55.5 42 69.0
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.3e-06 55.5 42 69.0
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 8.2e-06 55.1 62 51.6
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 8.2e-06 55.1 41 73.2
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 8.2e-06 55.1 62 50.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 8.2e-06 55.1 43 55.8


User provided reference genes

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