Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.2e-51 204.1 107 100.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.6e-44 182.6 107 89.7
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.7e-41 172.6 107 84.1
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.2e-41 172.2 107 85.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.7e-38 162.5 107 78.5
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.0e-38 161.8 107 75.7
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.1e-37 159.8 128 71.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.5e-37 159.5 107 76.6
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 7.3e-37 157.1 107 76.6
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 2.1e-36 155.6 105 73.3
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 3.6e-36 154.8 107 76.6
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.1e-36 153.7 107 74.8
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.8e-35 152.5 107 72.9
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.8e-35 152.5 107 73.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.8e-35 152.5 107 75.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 3.1e-35 151.8 109 73.4
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-34 149.8 107 70.1
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-34 149.8 107 70.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.5e-34 149.4 107 72.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.5e-34 149.4 107 69.2
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 72.9
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 72.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 73.8
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.4e-34 148.3 107 70.1
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 4.4e-34 147.9 108 71.3
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.8e-34 147.5 107 72.9
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 5.8e-34 147.5 93 81.7
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.3e-33 146.4 106 74.5
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 3.8e-33 144.8 107 69.2
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 4.9e-33 144.4 108 68.5
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 6.4e-33 144.1 114 68.4
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 8.4e-33 143.7 105 70.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 70.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 70.1
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.4e-33 143.7 106 72.6
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 8.4e-33 143.7 106 72.6
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 8.4e-33 143.7 106 71.7
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-32 143.3 105 67.6
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-32 143.3 105 67.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.1e-32 143.3 106 72.6
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 70.1
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.4e-32 142.9 116 67.2
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-32 142.5 105 71.4
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-32 142.5 105 71.4
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 1.9e-32 142.5 107 71.0
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.4e-32 142.1 106 70.8
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 70.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 70.1
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.2e-32 141.4 75 100.0
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 5.4e-32 141.0 107 69.2
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 66.7
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 69.2
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.7e-31 138.7 107 65.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 2.7e-31 138.7 107 69.2
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 68.6
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.5e-31 138.3 107 71.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 6.0e-31 137.5 106 69.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.0e-30 136.7 107 69.2
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.0e-30 136.7 107 69.2
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.0e-30 136.7 105 66.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.3e-30 136.3 104 70.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 84 78.6
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.7e-30 136.0 125 59.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 69.2
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 8.7e-30 133.7 107 64.5
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 8.7e-30 133.7 93 74.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 8.7e-30 133.7 107 68.2
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 8.7e-30 133.7 105 67.6
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.1e-29 133.3 108 66.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 63.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-29 132.5 105 67.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.9e-29 132.5 103 66.0
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.9e-29 132.5 120 63.3
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.9e-29 132.5 96 68.8
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.9e-29 132.5 93 71.0
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.9e-29 132.5 105 66.7
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 3.3e-29 131.7 107 70.1
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 4.3e-29 131.3 102 69.6
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 88 71.6
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 98 64.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 7.3e-29 130.6 104 66.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 60.7
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 67.6
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 90 67.8
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.6e-28 129.4 89 68.5
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.6e-28 129.4 89 68.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.6e-28 129.4 105 61.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.6e-28 129.4 105 66.7
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.1e-28 129.0 105 61.0
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 2.8e-28 128.6 99 67.7
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 3.6e-28 128.3 88 69.3
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 6.2e-28 127.5 105 61.0
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.2e-28 127.5 105 61.9
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 8.1e-28 127.1 105 59.0
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 59.0
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 59.0
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 59.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.1e-27 126.7 105 60.0
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 60.0
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.4e-27 126.3 105 61.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.4e-27 126.3 85 75.3
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.4e-27 126.3 107 63.6
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-27 126.3 105 65.7
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.8e-27 125.9 87 66.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.8e-27 125.9 107 58.9
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.1e-27 125.2 105 59.0
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.1e-27 125.2 105 64.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 4.0e-27 124.8 114 57.9
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 9.0e-27 123.6 105 57.1
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 9.0e-27 123.6 104 64.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 9.0e-27 123.6 104 64.4
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.2e-26 123.2 93 69.9
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.0e-26 122.5 108 63.9
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 2.0e-26 122.5 105 63.8
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 4.5e-26 121.3 108 58.3
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 5.8e-26 120.9 95 68.4
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.9e-26 120.2 105 57.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.3e-25 119.8 100 64.0
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.8e-25 118.2 105 63.8
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.4e-24 116.3 107 57.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.9e-24 115.9 90 61.1
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 103 58.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 4.2e-24 114.8 106 56.6
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 5.4e-24 114.4 108 59.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.1e-24 114.0 88 60.2
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.2e-23 113.2 107 57.0
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 2.1e-23 112.5 107 57.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 3.0e-22 108.6 108 56.5
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.1e-21 106.7 108 56.5
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 2.5e-21 105.5 107 53.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 4.0e-19 98.2 76 75.0
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.5e-18 96.3 66 74.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 9.9e-18 93.6 73 65.8
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.8e-17 91.7 76 67.1
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.1e-16 90.1 100 50.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 7.1e-16 87.4 64 67.2
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 7.1e-16 87.4 75 68.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 6.0e-15 84.3 73 61.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.0e-14 83.6 74 66.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-14 83.2 54 77.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.3e-14 83.2 83 53.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.0e-14 82.0 74 63.5
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 2.5e-13 79.0 89 49.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.3e-13 78.6 60 61.7
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.7e-09 66.2 108 42.6
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 4.2e-08 61.6 67 47.8
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.3e-06 55.8 37 70.3


User provided reference genes

Program Settings