Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 2.8e-114 415.2 204 100.0
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.1e-57 227.3 200 60.0
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 6.2e-53 211.5 191 56.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 1.0e-50 204.1 228 52.6
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 8.4e-50 201.1 185 58.9
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.1e-48 196.4 218 51.8
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 4.6e-48 195.3 176 56.2
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 4.6e-48 195.3 204 53.4
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 7.9e-48 194.5 160 66.2
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.8e-47 193.4 213 52.1
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 3.9e-47 192.2 175 59.4
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 3.9e-47 192.2 207 51.2
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 7.4e-46 188.0 188 53.2
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.3e-45 187.2 202 53.0
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.8e-45 185.3 204 51.5
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.3e-45 184.9 213 47.9
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.1e-44 184.1 162 58.6
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.1e-44 182.2 204 49.5
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 6.9e-44 181.4 204 49.0
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.2e-43 180.6 215 50.7
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 1.5e-43 180.3 199 51.3
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-42 177.2 214 48.6
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 2.9e-42 176.0 169 55.6
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 6.5e-42 174.9 174 50.0
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.4e-41 173.7 172 55.2
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 1.9e-41 173.3 217 46.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 3.2e-41 172.6 180 56.1
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.2e-41 171.4 214 47.7
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.2e-41 171.4 214 47.7
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.2e-41 171.4 205 49.8
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.6e-40 168.7 186 48.9
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 5.1e-39 165.2 210 45.7
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.5e-38 163.7 171 54.4
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.3e-38 162.2 211 46.4
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 7.4e-38 161.4 198 49.0
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.6e-37 160.2 174 50.6
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.4e-36 157.1 175 52.6
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.8e-36 156.8 168 49.4
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 4.5e-35 152.1 204 44.1
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 1.7e-34 150.2 187 43.9
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 3.2e-33 146.0 171 49.7
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 3.2e-33 146.0 168 47.0
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.2e-33 145.6 284 36.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 7.2e-33 144.8 186 43.5
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 3.9e-31 139.0 281 35.2
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 2.0e-30 136.7 274 35.8
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 4.3e-30 135.6 176 40.9
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 7.4e-30 134.8 244 36.5
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 2.8e-29 132.9 172 43.6
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 4.8e-29 132.1 241 37.3
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.4e-28 129.8 128 53.9
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.4e-28 129.8 132 53.8
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 2.9e-26 122.9 257 36.6
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 5.0e-26 122.1 198 37.4
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 8.5e-26 121.3 114 58.8
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 7.2e-25 118.2 176 37.5
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 9.4e-25 117.9 257 35.8
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.4e-23 114.0 94 60.6
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 2.6e-22 109.8 195 37.9
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 3.7e-21 105.9 89 60.7
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.5e-19 99.0 200 33.5
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.0e-18 97.8 89 51.7
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 3.2e-17 92.8 202 31.2
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 2.7e-16 89.7 81 48.1
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.8e-15 84.7 79 49.4
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.5e-14 84.0 90 42.2
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 9.7e-14 81.3 96 40.6
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 9.7e-14 81.3 176 33.0
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 2.2e-13 80.1 98 42.9
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 2.2e-13 80.1 178 32.0
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 2.2e-13 80.1 178 32.0
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.8e-13 79.7 121 32.2
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 6.3e-13 78.6 186 29.0
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 6.3e-13 78.6 104 38.5
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.4e-12 77.4 81 42.0
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 1.8e-12 77.0 168 28.0
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.8e-12 77.0 94 38.3
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.4e-12 76.6 71 50.7
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 3.1e-12 76.3 71 45.1
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 4.1e-12 75.9 100 41.0
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 4.1e-12 75.9 75 44.0
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.1e-12 75.9 71 49.3
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 4.1e-12 75.9 110 40.9
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 9.1e-12 74.7 78 44.9
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 2.0e-11 73.6 71 43.7
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 2.0e-11 73.6 100 35.0
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.7e-11 73.2 83 41.0
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.5e-11 72.8 77 37.7
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.5e-11 72.4 78 41.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 7.7e-11 71.6 71 45.1
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 7.7e-11 71.6 71 43.7
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.7e-11 71.6 71 43.7
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.7e-11 71.6 71 43.7
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.0e-10 71.2 71 43.7
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.0e-10 71.2 71 43.7
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 1.3e-10 70.9 98 37.8
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.3e-10 70.9 71 40.8
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 1.7e-10 70.5 79 44.3
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.7e-10 70.5 79 44.3
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 1.7e-10 70.5 146 30.1
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 2.2e-10 70.1 71 42.3
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 2.9e-10 69.7 108 33.3
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.9e-10 69.7 76 46.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.9e-10 69.7 71 45.1
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.9e-10 69.7 71 45.1
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 2.9e-10 69.7 71 42.3
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 2.9e-10 69.7 94 37.2
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 2.9e-10 69.7 71 45.1
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.5e-10 68.6 75 45.3
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.5e-10 68.6 75 45.3
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.5e-10 68.6 75 45.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 8.5e-10 68.2 74 39.2
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.1e-09 67.8 71 45.1
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.1e-09 67.8 73 41.1
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 1.1e-09 67.8 80 40.0
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 1.5e-09 67.4 75 38.7
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.9e-09 67.0 73 41.1
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 2.5e-09 66.6 87 40.2
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 2.5e-09 66.6 80 40.0
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 3.2e-09 66.2 84 36.9
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 3.2e-09 66.2 74 40.5
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.2e-09 65.9 71 43.7
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 7.2e-09 65.1 78 38.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 7.2e-09 65.1 109 35.8
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 7.2e-09 65.1 77 40.3
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 9.4e-09 64.7 90 34.4
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 1.6e-08 63.9 85 38.8
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.6e-08 63.9 89 37.1
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.6e-08 63.9 89 36.0
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.6e-08 63.9 75 38.7
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.1e-08 63.5 112 33.0
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 2.1e-08 63.5 186 26.3
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 2.7e-08 63.2 80 38.8
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 2.7e-08 63.2 68 41.2
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 3.6e-08 62.8 74 40.5
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 3.6e-08 62.8 87 33.3
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 3.6e-08 62.8 80 40.0
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 4.7e-08 62.4 74 36.5
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 4.7e-08 62.4 101 33.7
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 4.7e-08 62.4 70 44.3
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 8.0e-08 61.6 72 38.9
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 1.4e-07 60.8 137 29.2
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.4e-07 60.8 77 39.0
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 2.3e-07 60.1 70 40.0
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 3.0e-07 59.7 75 37.3
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 3.0e-07 59.7 80 36.2
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 3.0e-07 59.7 84 34.5
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 6.8e-07 58.5 70 31.4
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 6.8e-07 58.5 84 35.7
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 8.8e-07 58.2 70 35.7
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.2e-06 57.8 74 36.5
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 1.2e-06 57.8 74 35.1
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 1.2e-06 57.8 81 34.6
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.2e-06 57.8 77 35.1
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 1.5e-06 57.4 90 40.0
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 1.5e-06 57.4 77 35.1
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 2.6e-06 56.6 96 30.2
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.6e-06 56.6 80 33.8
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.6e-06 56.6 93 33.3
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 4.4e-06 55.8 57 49.1
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 4.4e-06 55.8 72 36.1
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 4.4e-06 55.8 92 31.5
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 5.7e-06 55.5 72 37.5
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 5.7e-06 55.5 95 38.9
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 5.7e-06 55.5 72 36.1
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 7.5e-06 55.1 55 43.6
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 9.8e-06 54.7 74 31.1
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 9.8e-06 54.7 74 31.1
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 9.8e-06 54.7 68 35.3
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 9.8e-06 54.7 69 36.2
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 9.8e-06 54.7 88 34.1


User provided reference genes

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