Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 6.6e-103 377.5 206 100.0
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 7.4e-86 320.9 206 86.4
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.9e-73 279.6 207 77.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.2e-73 278.5 205 77.1
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.2e-73 278.5 205 78.0
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 5.5e-73 278.1 207 75.4
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 3.6e-72 275.4 207 75.8
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 6.1e-72 274.6 214 75.7
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.1e-71 271.6 205 75.6
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.5e-70 269.2 215 74.4
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 3.3e-70 268.9 205 74.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 9.7e-70 267.3 207 73.4
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.2e-69 266.2 207 72.9
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 6.3e-69 264.6 215 74.9
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.1e-68 263.8 207 74.4
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.8e-68 263.1 205 71.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 1.8e-68 263.1 206 72.8
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.4e-68 262.7 222 70.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 6.9e-68 261.2 206 73.3
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 2.0e-67 259.6 207 71.5
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 4.5e-67 258.5 204 72.1
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 5.9e-67 258.1 207 71.0
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.9e-67 258.1 229 66.4
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 2.2e-66 256.1 228 67.1
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 5.0e-66 255.0 201 73.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.0e-66 255.0 204 70.1
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.1e-65 253.8 201 73.6
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 5.5e-65 251.5 212 65.1
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.2e-64 250.4 219 68.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 1.8e-63 246.5 219 66.2
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.3e-63 246.1 173 78.6
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 5.1e-63 245.0 220 67.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.1e-63 245.0 162 82.7
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 6.7e-63 244.6 148 86.5
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.1e-62 243.8 210 70.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.5e-62 243.4 212 66.5
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 4.8e-61 238.4 207 68.6
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.3e-61 238.0 204 67.6
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.1e-60 237.3 217 66.8
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-60 236.9 213 65.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.8e-60 236.5 246 62.2
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 9.1e-60 234.2 210 68.1
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.0e-59 233.0 206 65.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.4e-59 232.3 222 63.5
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 3.4e-59 232.3 204 65.2
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 7.7e-59 231.1 205 68.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.0e-58 230.7 204 64.2
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 3.8e-58 228.8 203 68.0
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 5.0e-58 228.4 229 63.3
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.4e-57 226.9 217 64.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.5e-57 226.1 209 65.6
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 7.2e-57 224.6 166 78.9
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.2e-56 223.8 265 56.6
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.6e-56 222.2 214 61.7
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 1.0e-55 220.7 219 60.7
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-55 220.3 218 62.8
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 6.7e-55 218.0 258 55.0
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 3.3e-54 215.7 212 62.3
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.7e-54 214.9 222 59.9
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.2e-53 213.0 173 74.6
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.4e-52 210.3 204 62.3
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 7.0e-52 208.0 205 61.0
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 4.5e-51 205.3 165 73.9
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.3e-50 203.8 217 58.1
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 3.8e-50 202.2 217 57.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 5.0e-50 201.8 206 59.2
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.7e-48 195.3 206 58.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.0e-47 194.1 169 71.6
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.0e-47 192.2 217 58.1
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.6e-46 189.5 164 69.5
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.8e-45 185.3 288 48.3
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.3e-45 184.9 164 66.5
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.2e-45 184.5 165 69.7
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.1e-44 182.6 170 66.5
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 5.3e-44 181.8 179 64.8
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.0e-43 179.9 179 62.0
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 2.0e-43 179.9 94 96.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.5e-43 179.1 97 94.8
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.7e-42 176.8 92 95.7
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-42 176.8 92 95.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 2.2e-42 176.4 92 94.6
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.2e-42 176.4 92 95.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.9e-42 176.0 92 94.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.8e-42 175.6 92 94.6
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 5.0e-42 175.3 185 62.2
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 8.5e-42 174.5 92 94.6
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.9e-41 173.3 92 93.5
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 9.4e-41 171.0 93 94.6
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.2e-40 170.6 171 59.1
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 4.7e-40 168.7 218 51.4
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 6.1e-40 168.3 266 48.1
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.8e-39 166.8 273 47.3
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 5.2e-39 165.2 92 90.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 5.2e-39 165.2 92 90.2
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.3e-37 160.6 95 91.6
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.3e-37 160.6 223 49.3
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 3.1e-36 156.0 204 50.0
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 4.1e-36 155.6 170 57.1
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 3.5e-35 152.5 119 64.7
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 4.7e-32 142.1 206 49.5
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.2e-30 137.5 210 46.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 4.9e-29 132.1 316 37.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 4.1e-28 129.0 240 45.4
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 5.4e-28 128.6 181 53.0
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.2e-27 127.5 100 72.0
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 2.3e-26 123.2 168 48.8
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 2.5e-25 119.8 107 66.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 4.7e-24 115.5 157 53.5
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.3e-23 113.2 176 44.3
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 3.0e-23 112.8 63 87.3
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 8.9e-23 111.3 148 56.1
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 6.0e-19 98.6 52 94.2
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 5.6e-17 92.0 169 46.2
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.5e-17 91.3 114 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 2.1e-16 90.1 209 36.8
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 3.6e-16 89.4 280 33.2
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.6e-16 89.4 88 63.6
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.8e-15 87.0 76 65.8
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.8e-15 87.0 76 65.8
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 2.3e-15 86.7 118 53.4
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.9e-13 79.0 40 92.5
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.1e-12 77.8 119 42.9
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 2.4e-12 76.6 56 73.2
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 5.4e-12 75.5 108 48.1
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 4.6e-11 72.4 41 85.4
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 6.0e-11 72.0 59 71.2
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.0e-10 71.2 135 44.4
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.3e-10 70.9 169 36.7
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.9e-09 67.0 40 80.0
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.2e-08 64.3 42 81.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-07 60.8 35 88.6
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.8e-07 60.5 87 46.0


User provided reference genes

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