Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.1e-30 133.3 67 100.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.9e-16 86.3 67 67.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.9e-16 86.3 67 67.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.8e-15 84.3 67 64.2
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 3.2e-14 81.3 51 80.4
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 5.5e-14 80.5 69 56.5
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 2.1e-13 78.6 53 69.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.7e-13 78.2 51 74.5
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.7e-13 78.2 67 59.7
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 3.5e-13 77.8 67 59.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.6e-13 77.4 69 59.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 4.6e-13 77.4 67 59.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.0e-13 77.0 67 58.2
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 6.0e-13 77.0 67 61.2
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.0e-12 74.7 67 58.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.0e-12 74.7 67 58.2
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.0e-12 74.7 67 58.2
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.9e-12 74.3 67 61.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.9e-12 74.3 70 60.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 5.1e-12 73.9 67 55.2
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.1e-12 73.9 70 57.1
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.7e-12 73.6 67 58.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 6.7e-12 73.6 67 58.2
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.1e-11 72.8 68 58.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.1e-11 72.8 47 72.3
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.5e-11 72.4 49 71.4
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.5e-11 72.4 67 52.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.5e-11 72.4 67 52.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.3e-11 70.9 70 55.7
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.6e-11 70.5 51 74.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.4e-11 70.1 52 71.2
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 7.4e-11 70.1 49 71.4
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.1e-10 68.6 45 71.1
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.1e-10 68.6 45 71.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.1e-10 68.6 66 57.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.1e-10 68.6 49 71.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.8e-10 68.2 45 80.0
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 2.8e-10 68.2 56 62.5
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 3.7e-10 67.8 66 54.5
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.8e-10 67.4 66 54.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 8.2e-10 66.6 51 60.8
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-09 66.2 47 72.3
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.4e-09 65.9 45 71.1
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.8e-09 65.5 49 69.4
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.4e-09 65.1 66 51.5
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 5.3e-09 63.9 52 65.4
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 6.9e-09 63.5 48 72.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 9.0e-09 63.2 51 66.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 9.0e-09 63.2 47 70.2
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.5e-08 62.4 66 51.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.0e-08 62.0 48 70.8
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 2.0e-08 62.0 53 62.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-08 61.6 49 67.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 4.5e-08 60.8 47 68.1
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 5.8e-08 60.5 67 46.3
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.8e-08 60.5 48 68.8
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 7.6e-08 60.1 67 52.2
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-08 60.1 67 52.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-08 60.1 67 52.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-08 60.1 67 52.2
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-08 60.1 67 52.2
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 7.6e-08 60.1 45 68.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.0e-07 59.7 53 62.3
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.0e-07 59.7 66 48.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.3e-07 59.3 48 68.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-07 59.3 68 52.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-07 58.9 47 66.0
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-07 58.9 47 66.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-07 58.9 49 61.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-07 58.9 49 61.2
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.2e-07 58.5 48 64.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.2e-07 58.5 51 60.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.9e-07 58.2 49 63.3
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.9e-07 58.2 51 56.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 3.8e-07 57.8 51 60.8
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.8e-07 57.8 50 62.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.8e-07 57.8 55 63.6
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 3.8e-07 57.8 55 63.6
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.9e-07 57.4 51 60.8
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.9e-07 57.4 51 60.8
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.9e-07 57.4 49 63.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 4.9e-07 57.4 49 65.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-06 56.2 49 65.3
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.1e-06 56.2 66 51.5
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-06 55.8 51 58.8
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.4e-06 55.8 51 58.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.4e-06 55.8 49 61.2
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.9e-06 55.5 45 60.0
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.9e-06 55.5 51 58.8
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.9e-06 55.5 51 56.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-06 55.1 51 52.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.2e-06 54.7 51 58.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.5e-06 53.9 51 56.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.1e-06 53.5 51 56.9
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.1e-06 53.5 51 56.9
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 7.1e-06 53.5 49 63.3


User provided reference genes

Program Settings