Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.9e-230 801.6 420 100.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.3e-165 585.1 400 78.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.2e-163 578.2 427 74.0
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.5e-157 559.3 414 74.6
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.2e-156 557.0 413 73.8
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.6e-154 549.3 418 71.8
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 5.8e-154 548.1 418 72.5
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.9e-141 506.5 408 67.9
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.6e-141 504.2 506 58.5
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.0e-138 496.5 407 65.8
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 7.6e-138 494.6 421 65.6
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 9.9e-138 494.2 407 64.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 7.1e-136 488.0 404 64.6
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.3e-134 483.8 407 64.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.3e-134 483.8 407 64.4
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 5.1e-134 481.9 410 63.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.5e-133 479.6 407 64.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 2.8e-132 476.1 396 65.4
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 8.1e-132 474.6 417 62.8
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.4e-131 473.8 406 63.8
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 9.9e-130 467.6 399 65.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.4e-128 463.8 417 62.6
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.4e-128 463.0 407 62.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.5e-128 461.8 408 63.0
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 7.1e-128 461.5 407 63.6
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.0e-126 457.6 400 62.8
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 6.7e-126 454.9 406 60.6
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 6.7e-126 454.9 399 62.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-125 454.1 402 62.4
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 2.5e-125 453.0 424 59.9
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 9.6e-125 451.1 387 63.6
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.3e-124 450.7 419 62.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.8e-124 449.5 420 60.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.8e-124 449.5 402 61.7
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 3.7e-124 449.1 420 60.2
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 8.2e-124 448.0 404 60.4
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.8e-123 446.8 394 61.9
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.8e-123 446.8 413 62.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 2.4e-123 446.4 410 60.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.4e-123 446.4 439 59.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 6.9e-123 444.9 419 61.3
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 9.0e-123 444.5 408 60.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-122 444.1 402 61.4
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-122 443.4 420 59.8
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 7.6e-122 441.4 413 59.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-121 441.0 413 59.8
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.7e-121 440.3 417 57.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.8e-121 439.1 419 59.9
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.1e-120 437.6 420 58.8
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.2e-120 436.0 398 60.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 5.5e-120 435.3 413 58.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-119 434.1 386 61.9
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.6e-119 433.7 407 59.0
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 6.0e-119 431.8 415 57.8
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.8e-118 430.3 453 56.7
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-118 429.9 403 59.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.0e-118 429.5 406 57.9
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-118 429.1 386 61.1
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.5e-117 427.2 386 60.9
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 2.5e-117 426.4 394 60.4
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 4.3e-117 425.6 361 64.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.3e-116 424.1 387 61.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.8e-116 422.2 387 60.7
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.3e-116 421.8 353 66.3
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.4e-115 419.9 427 58.5
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 5.3e-115 418.7 334 68.3
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 4.5e-114 415.6 504 51.0
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.6e-114 414.8 396 58.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.0e-113 414.5 382 61.0
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.0e-113 414.5 407 57.7
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.7e-113 413.7 405 57.5
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.2e-113 413.3 391 61.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 5.5e-112 408.7 417 55.6
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.1e-111 406.8 425 55.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.1e-111 406.8 369 62.3
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-109 400.6 334 70.1
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 9.7e-109 397.9 424 56.1
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.1e-107 394.4 407 54.8
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.8e-107 393.7 381 61.7
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.8e-107 393.7 372 61.0
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.2e-106 391.0 400 55.8
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 5.9e-106 388.7 410 56.1
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-105 387.9 406 56.7
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.9e-105 386.3 411 55.5
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 5.0e-105 385.6 432 53.5
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.5e-104 383.3 420 54.0
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-100 370.9 379 58.6
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.2e-100 370.2 414 52.7
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 5.3e-99 365.5 398 51.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.8e-97 359.4 403 51.4
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.4e-96 357.5 396 50.8
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 3.9e-94 349.4 395 50.9
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.0e-93 347.1 426 48.4
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.3e-93 346.3 351 59.3
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 4.4e-93 345.9 414 52.4
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 9.7e-93 344.7 326 60.4
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 2.8e-92 343.2 396 49.7
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.7e-92 342.8 400 49.5
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.1e-91 339.7 396 49.5
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.2e-90 337.8 396 48.7
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.7e-90 335.1 393 49.4
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.2e-89 333.6 395 48.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.8e-89 332.8 407 48.2
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.0e-89 332.4 395 48.4
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.1e-87 327.0 405 47.7
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-83 314.3 292 62.3
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.5e-82 309.3 396 49.5
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.2e-79 301.2 420 43.3
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 5.9e-74 282.3 360 48.1
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 7.2e-72 275.4 407 46.2
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.3e-64 248.8 357 46.5
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 5.2e-62 242.7 232 55.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 7.5e-61 238.8 361 45.2
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.3e-60 238.0 314 45.5
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.9e-60 236.9 320 49.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 5.4e-59 232.6 253 58.5
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 9.2e-59 231.9 438 39.0
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-55 221.1 232 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 3.1e-46 190.3 418 34.7
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.6e-33 146.0 148 54.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.6e-33 146.0 148 54.7
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.4e-30 138.3 92 68.5
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.8e-30 137.9 149 57.0
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.9e-28 130.6 119 52.9
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.7e-26 124.0 287 33.1
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.7e-25 121.3 357 31.7
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.6e-23 114.8 98 73.5
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.8e-23 114.0 164 42.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.8e-22 111.3 142 46.5
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.0e-21 107.8 73 86.3
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.8e-14 84.7 65 70.8
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.6e-13 79.3 183 36.6
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.7e-10 70.9 109 43.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 6.0e-10 69.7 39 66.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 7.9e-10 69.3 90 52.2
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.9e-09 67.0 42 88.1
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 9.6e-08 62.4 141 31.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 5.3e-06 56.6 93 48.4


User provided reference genes

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