Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-117 426.0 218 100.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-109 400.2 207 98.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-109 399.1 207 98.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.5e-108 393.7 207 97.1
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-103 378.6 227 88.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 5.2e-90 334.7 220 79.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.9e-80 301.6 174 85.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.6e-78 295.0 218 72.5
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 9.6e-76 287.3 222 69.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.4e-74 283.5 218 70.2
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 4.0e-74 282.0 210 74.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.0e-74 282.0 220 71.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.0e-74 282.0 219 73.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 6.9e-74 281.2 210 70.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 6.9e-74 281.2 219 73.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.6e-73 279.3 188 75.5
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.6e-73 279.3 213 69.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.8e-73 278.1 213 69.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.8e-73 278.1 210 69.5
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 9.9e-73 277.3 223 70.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.7e-72 276.6 219 71.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.7e-72 276.6 186 76.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-72 276.6 181 77.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.2e-72 276.2 219 67.6
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-71 273.9 206 71.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.1e-71 273.9 223 67.7
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-71 273.9 163 84.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.1e-71 273.9 195 73.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-71 273.9 219 66.7
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.4e-71 273.5 219 70.8
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.9e-71 273.1 206 69.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.2e-71 271.9 205 71.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.4e-71 271.6 194 72.2
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 7.1e-71 271.2 203 70.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 9.3e-71 270.8 220 67.7
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.2e-70 270.4 196 72.4
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.1e-70 269.6 219 67.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.1e-70 269.6 223 67.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-70 269.6 194 74.7
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.7e-70 269.2 220 67.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.5e-70 268.9 207 69.6
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.6e-70 268.5 208 70.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.6e-70 268.5 213 70.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.6e-70 268.5 214 70.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 6.0e-70 268.1 221 67.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.0e-70 268.1 205 68.8
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 6.0e-70 268.1 155 84.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 7.8e-70 267.7 206 70.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 7.8e-70 267.7 215 68.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 7.8e-70 267.7 195 72.8
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.0e-69 267.3 220 66.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.3e-69 266.9 206 69.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-69 266.5 208 69.2
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-69 266.5 206 70.4
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.7e-69 266.5 195 72.3
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-69 266.5 220 68.6
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.7e-69 266.5 195 72.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.7e-69 266.5 195 72.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.3e-69 266.2 203 70.4
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.3e-69 266.2 212 71.7
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.0e-69 265.8 217 67.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.9e-69 265.4 217 66.8
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 8.7e-69 264.2 214 67.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-68 263.8 184 73.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.5e-68 262.7 222 68.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 4.3e-68 261.9 207 68.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 4.3e-68 261.9 209 68.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.3e-68 261.9 188 72.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 5.6e-68 261.5 202 69.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.6e-68 261.5 220 66.8
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 7.3e-68 261.2 206 67.5
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.6e-67 260.0 219 66.2
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.1e-67 259.6 187 75.4
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.1e-67 259.6 212 65.1
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-67 259.6 196 71.4
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.8e-67 259.2 222 66.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.6e-67 258.8 197 71.6
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.6e-67 258.8 226 66.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.6e-67 258.8 190 71.6
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.4e-66 256.9 223 64.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.4e-66 256.9 158 81.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.8e-66 256.5 270 57.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-66 256.1 214 65.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.1e-66 255.8 222 65.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.9e-66 254.6 196 69.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.9e-66 254.6 214 66.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.6e-65 252.7 214 65.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-65 252.7 214 65.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-65 252.7 214 65.9
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.4e-65 252.3 218 64.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-65 252.3 214 65.9
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.4e-65 252.3 222 63.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.5e-65 251.9 213 67.1
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.6e-65 251.1 227 63.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 9.9e-65 250.8 215 66.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.2e-64 249.6 191 70.7
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 6.4e-64 248.1 190 69.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.1e-63 247.3 223 65.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.2e-63 245.4 195 69.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.1e-62 243.0 194 68.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.6e-62 241.9 222 64.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.0e-62 241.5 217 64.1
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.3e-61 240.4 202 64.4
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.8e-61 240.0 200 67.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.3e-59 233.8 157 74.5
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 6.9e-58 228.0 150 75.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.0e-58 227.6 203 60.6
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.5e-57 226.9 226 59.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-57 226.1 123 89.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.9e-56 222.6 168 69.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-55 219.5 208 61.1
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.5e-54 215.7 170 67.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 6.0e-54 214.9 213 58.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.0e-53 214.2 295 47.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.9e-53 212.2 189 59.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.4e-50 203.8 156 68.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.5e-49 200.3 208 54.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.5e-49 200.3 208 54.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.5e-49 200.3 154 66.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.4e-49 199.1 146 70.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.4e-49 199.1 118 78.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.0e-48 197.6 156 64.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-48 197.2 227 55.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.4e-47 193.7 102 95.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.1e-46 189.9 121 77.7
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.9e-44 183.3 120 75.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 7.4e-44 181.4 120 74.2
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.2e-39 165.6 93 84.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 5.5e-39 165.2 219 48.9
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.7e-38 162.9 190 48.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.5e-36 157.1 166 50.6
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.5e-36 156.4 210 45.7
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.3e-35 154.1 81 93.8
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.2e-35 153.3 137 56.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 5.3e-34 148.7 106 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.5e-33 147.1 129 55.8
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 6.1e-30 135.2 185 44.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.0e-29 134.4 142 58.5
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.8e-27 125.6 80 78.8
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-26 124.4 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-26 124.4 67 89.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 8.8e-21 104.8 86 62.8
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.1e-18 96.3 128 43.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.1e-18 95.9 70 70.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 8.0e-14 81.6 50 76.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 6.5e-08 62.0 122 40.2
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 9.4e-07 58.2 38 73.7


User provided reference genes

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