Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040121 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.2e-82 307.4 152 100.0
CSS0009897 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 7.6e-80 300.4 152 98.0
CSS0048751 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.4e-79 297.4 152 98.0
CSS0014849 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 9.0e-57 223.8 196 66.3
CSS0013095 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 2.2e-47 192.6 100 94.0
CSS0015629 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.9e-32 141.4 69 97.1
Actinidia17791 Actinidia chinensis HOM05D007327 ORTHO05D009342 2.1e-29 132.9 69 88.4
Dinv25868 Davidia involucrata HOM05D007327 ORTHO05D009342 1.7e-26 123.2 70 85.7
COL.COLO4_08563 Corchorus olitorius HOM05D007327 ORTHO05D009342 1.4e-25 120.2 70 81.4
HanXRQChr04g0108941 Helianthus annuus HOM05D007327 ORTHO05D009342 3.1e-25 119.0 90 70.0
Thecc.08G153100 Theobroma cacao HOM05D007327 ORTHO05D009342 5.4e-25 118.2 67 80.6
Gohir.A01G103900 Gossypium hirsutum HOM05D007327 ORTHO05D009342 2.0e-24 116.3 67 82.1
Gohir.D01G089200 Gossypium hirsutum HOM05D007327 ORTHO05D009342 2.0e-24 116.3 67 82.1
Gorai.002G114900 Gossypium raimondii HOM05D007327 ORTHO05D009342 2.0e-24 116.3 67 82.1
RcHm_v2.0_Chr6g0275381 Rosa chinensis HOM05D007327 ORTHO05D009342 2.0e-24 116.3 67 82.1
GSVIVG01034535001 Vitis vinifera HOM05D007327 ORTHO05D009342 2.0e-24 116.3 77 75.3
Duzib093G0512 Durio zibethinus HOM05D007327 ORTHO05D009342 3.5e-24 115.5 70 78.6
ECA247G1449 Erigeron canadensis HOM05D007327 ORTHO05D009342 4.5e-24 115.2 90 65.6
QL02p039069 Quercus lobata HOM05D007327 ORTHO05D009342 4.5e-24 115.2 70 75.7
Oeu051268.1 Olea europaea HOM05D007327 ORTHO05D009342 7.7e-24 114.4 68 83.8
Sed0007638 Sechium edule HOM05D007327 ORTHO05D009342 1.7e-23 113.2 70 78.6
TAR628G0726 Trochodendron aralioides HOM05D007327 ORTHO05D009342 1.7e-23 113.2 68 79.4
FAN15G0044 Fragaria x ananassa HOM05D007327 ORTHO05D009342 2.9e-23 112.5 67 80.6
Manes.18G092400 Manihot esculenta HOM05D007327 ORTHO05D009342 2.9e-23 112.5 70 77.1
MELO3C029831.2 Cucumis melo HOM05D007327 ORTHO05D009342 3.8e-23 112.1 69 76.8
FvH4_2g13700 Fragaria vesca HOM05D007327 ORTHO05D009342 5.0e-23 111.7 67 80.6
FAN24G0347 Fragaria x ananassa HOM05D007327 ORTHO05D009342 5.0e-23 111.7 67 80.6
Sabra02G0053500 Salix brachista HOM05D007327 ORTHO05D009342 5.0e-23 111.7 67 76.1
Atru.chr13.2102 Acer truncatum HOM05D007327 ORTHO05D009342 6.5e-23 111.3 70 75.7
Eucgr.F04237 Eucalyptus grandis HOM05D007327 ORTHO05D009342 6.5e-23 111.3 70 78.6
TWI60G1090 Tripterygium wilfordii HOM05D007327 ORTHO05D009342 8.5e-23 110.9 110 52.7
Lsat_1_v5_gn_1_6021 Lactuca sativa HOM05D007327 ORTHO05D009342 1.5e-22 110.2 90 64.4
Phvul.004G094900 Phaseolus vulgaris HOM05D007327 ORTHO05D009342 1.5e-22 110.2 68 76.5
PGR044G2476 Punica granatum HOM05D007327 ORTHO05D009342 1.5e-22 110.2 68 76.5
PGR080G0004 Punica granatum HOM05D007327 ORTHO05D009342 1.5e-22 110.2 68 76.5
PGR100G0004 Punica granatum HOM05D007327 ORTHO05D009342 1.5e-22 110.2 68 76.5
Potri.002G067900 Populus trichocarpa HOM05D007327 ORTHO05D009342 1.9e-22 109.8 68 75.0
ClCG08G007070 Citrullus lanatus HOM05D007327 ORTHO05D009342 2.5e-22 109.4 91 62.6
Peaxi162Scf00599g00511 Petunia axillaris HOM05D007327 ORTHO05D009342 2.5e-22 109.4 70 75.7
Prupe.8G031100 Prunus persica HOM05D007327 ORTHO05D009342 2.5e-22 109.4 67 77.6
CiPaw.15G016000 Carya illinoinensis HOM05D007327 ORTHO05D009342 3.2e-22 109.0 69 73.9
Hma1.2p1_0105F.1_g050650 Hydrangea macrophylla HOM05D007327 ORTHO05D009342 3.2e-22 109.0 68 73.5
PSO541G6301 Papaver somniferum HOM05D007327 ORTHO05D009342 4.2e-22 108.6 95 61.1
PSO675G1203 Papaver somniferum HOM05D007327 ORTHO05D009342 4.2e-22 108.6 100 61.0
CsaV3_6G005130 Cucumis sativus L. HOM05D007327 ORTHO05D009342 5.5e-22 108.2 67 76.1
Glyma.16G166900 Glycine max HOM05D007327 ORTHO05D009342 5.5e-22 108.2 68 75.0
Cfa018321 Carpinus fangiana HOM05D007327 ORTHO05D009342 7.2e-22 107.8 69 75.4
Haze_17755 Corylus avellana HOM05D007327 ORTHO05D009342 7.2e-22 107.8 69 75.4
Glyma.02G081500 Glycine max HOM05D007327 ORTHO05D009342 7.2e-22 107.8 68 75.0
Lalb_Chr19g0130241 Lupinus albus HOM05D007327 ORTHO05D009342 7.2e-22 107.8 75 73.3
arahy.Tifrunner.gnm1.ann1.LUB646 Arachis hypogaea HOM05D007327 ORTHO05D009342 9.5e-22 107.5 68 72.1
arahy.Tifrunner.gnm1.ann1.S2I56E Arachis hypogaea HOM05D007327 ORTHO05D009342 9.5e-22 107.5 68 72.1
Ciclev10001558m.g Citrus clementina HOM05D007327 ORTHO05D009342 1.2e-21 107.1 63 81.0
MD05G1026600 Malus domestica HOM05D007327 ORTHO05D009342 1.2e-21 107.1 67 74.6
Lj2g0012645 Lotus japonicus HOM05D007327 ORTHO05D009342 4.7e-21 105.1 68 73.5
Nn5g28751 Nelumbo nucifera HOM05D007327 ORTHO05D009342 4.7e-21 105.1 90 61.1
Psat1g101680 Pisum sativum HOM05D007327 ORTHO05D009342 4.7e-21 105.1 68 72.1
Cpa.g.c33136.2 Carica papaya HOM05D007327 ORTHO05D009342 6.1e-21 104.8 65 75.4
Nitab4.5_0002452g0030 Nicotiana tabacum HOM05D007327 ORTHO05D009342 8.0e-21 104.4 67 74.6
Ca_25918_v3 Cicer arietinum L. HOM05D007327 ORTHO05D009342 1.0e-20 104.0 68 70.6
DCAR_010093 Daucus carota HOM05D007327 ORTHO05D009342 1.4e-20 103.6 70 72.9
TPR.G31184 Trifolium pratense HOM05D007327 ORTHO05D009342 2.3e-20 102.8 68 69.1
CANSAT25G1895 Cannabis sativa HOM05D007327 ORTHO05D009342 4.0e-20 102.1 90 56.7
Cc00_g31580 Coffea canephora HOM05D007327 ORTHO05D009342 5.2e-20 101.7 67 71.6
Cc10_g14850 Coffea canephora HOM05D007327 ORTHO05D009342 5.2e-20 101.7 67 71.6
Medtr6g036750 Medicago truncatula HOM05D007327 ORTHO05D009342 5.2e-20 101.7 68 69.1
Solyc04g071470.3 Solanum lycopersicum HOM05D007327 ORTHO05D009342 1.2e-19 100.5 67 73.1
Aqoxy6G00379 Aquilegia oxysepala HOM05D007327 ORTHO05D009342 3.4e-19 99.0 67 71.6
Hund26695 Selenicereus undatus HOM05D007327 ORTHO05D009342 4.4e-19 98.6 67 71.6
Sopen04g027430 Solanum pennellii HOM05D007327 ORTHO05D009342 7.5e-19 97.8 67 71.6
Migut.C00996 Erythranthe guttata HOM05D007327 ORTHO05D009342 1.7e-18 96.7 68 69.1
SGA_v2.0_scaffold24G10336 Striga asiatica HOM05D007327 ORTHO05D009342 4.9e-18 95.1 68 70.6
ATR0582G033 Amborella trichopoda HOM05D007327 ORTHO05D009342 6.3e-18 94.7 65 67.7
SalBow7G2928 Salvia bowleyana HOM05D007327 ORTHO05D009342 1.1e-17 94.0 68 70.6
Zm00001eb146700 Zea mays HOM05D007327 ORTHO05D009342 7.0e-17 91.3 64 70.3
HPP92_000065 Vanilla planifolia HOM05D007327 ORTHO05D009342 1.6e-16 90.1 83 56.6
Os01g0867200 Oryza sativa ssp. japonica HOM05D007327 ORTHO05D009342 7.8e-16 87.8 63 65.1
unitig_26.g9897 Utricularia gibba HOM05D007327 ORTHO05D009342 4.3e-14 82.0 64 62.5
SEGI_20996 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 2.3e-12 76.3 65 56.9
SHI09061 Sapria himalayana HOM05D007327 ORTHO05D009342 2.0e-11 73.2 40 77.5
Pp3c20_20940 Physcomitrium patens HOM05D007327 ORTHO05D009342 4.9e-10 68.6 65 56.9
SMO335G0004 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.1e-09 67.4 74 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2825 Anthoceros agrestis HOM05D007327 ORTHO05D009342 2.5e-06 56.2 65 49.2


User provided reference genes

Program Settings