Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.4e-193 679.5 341 100.0
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.8e-130 469.2 433 64.9
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.4e-129 466.8 433 64.7
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.4e-128 462.2 430 64.2
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 4.9e-111 405.2 428 57.9
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-107 393.3 399 61.7
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 6.2e-106 388.3 425 55.3
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 8.1e-106 387.9 427 56.2
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 2.7e-101 372.9 425 53.9
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 1.3e-100 370.5 407 55.8
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 3.9e-100 369.0 415 53.5
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 7.4e-99 364.8 415 53.0
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 9.6e-99 364.4 427 52.9
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 2.4e-97 359.8 430 52.3
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 1.0e-95 354.4 422 52.6
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 6.5e-95 351.7 416 52.2
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 1.1e-94 350.9 429 52.2
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 1.4e-94 350.5 422 52.1
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 2.1e-93 346.7 407 54.1
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 3.5e-93 345.9 416 51.4
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 6.0e-93 345.1 418 51.0
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.0e-93 345.1 412 51.9
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 7.9e-93 344.7 393 53.9
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.9e-93 344.7 415 51.3
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.0e-92 344.4 415 51.3
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 6.7e-92 341.7 428 49.8
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 6.7e-92 341.7 424 50.2
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 8.7e-92 341.3 423 50.4
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 3.3e-91 339.3 411 53.8
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 6.3e-90 335.1 445 48.5
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 6.9e-89 331.6 401 50.9
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 5.9e-88 328.6 424 50.5
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 1.3e-87 327.4 420 47.9
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 3.8e-87 325.9 403 50.4
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 6.5e-87 325.1 411 50.6
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 8.5e-87 324.7 400 51.5
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 8.5e-87 324.7 412 51.0
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 1.4e-86 323.9 398 51.8
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 1.9e-86 323.6 399 50.9
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 7.2e-86 321.6 396 50.5
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 1.6e-85 320.5 416 50.2
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.6e-85 319.3 459 45.5
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 4.6e-85 318.9 403 49.9
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 6.1e-85 318.5 422 48.1
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 7.9e-85 318.2 395 51.6
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 7.9e-85 318.2 398 51.8
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 1.0e-84 317.8 422 48.8
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 1.0e-84 317.8 425 47.3
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 1.3e-84 317.4 399 50.9
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.3e-84 316.6 424 48.1
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 6.7e-84 315.1 408 48.0
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 6.7e-84 315.1 425 48.5
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 1.5e-83 313.9 417 47.7
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 1.9e-83 313.5 425 47.3
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 2.2e-82 310.1 429 48.0
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 8.2e-82 308.1 411 47.4
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 2.4e-81 306.6 416 47.4
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.4e-81 306.6 337 59.6
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 7.7e-80 301.6 415 47.0
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.3e-79 300.8 439 45.3
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 1.7e-79 300.4 414 47.1
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 3.8e-79 299.3 397 47.9
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 5.0e-79 298.9 412 45.9
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 5.0e-79 298.9 407 45.9
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 1.9e-78 297.0 421 44.9
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 3.2e-78 296.2 394 48.5
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 4.2e-78 295.8 402 47.8
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 4.2e-78 295.8 402 47.5
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 4.2e-78 295.8 422 44.5
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 5.5e-78 295.4 419 46.3
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 7.2e-78 295.0 341 52.5
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 1.6e-77 293.9 406 47.3
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.6e-77 293.9 418 45.5
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 2.1e-77 293.5 428 45.6
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 3.6e-77 292.7 420 46.4
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 6.1e-77 292.0 362 51.9
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 3.0e-76 289.7 416 46.2
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 3.0e-76 289.7 417 44.8
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 1.5e-75 287.3 430 45.6
Peaxi162Scf00397g00041 Petunia axillaris HOM05D004612 ORTHO05D004940 3.3e-75 286.2 389 48.8
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 1.3e-74 284.3 415 45.8
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 1.3e-74 284.3 429 45.0
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 1.7e-74 283.9 304 56.2
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 6.9e-73 278.5 424 46.0
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 1.1e-70 271.2 411 44.5
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 2.5e-70 270.0 320 51.6
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 6.1e-69 265.4 435 42.5
AUR62023440 Chenopodium quinoa HOM05D004612 ORTHO05D004940 5.2e-68 262.3 401 43.6
AUR62033327 Chenopodium quinoa HOM05D004612 ORTHO05D004940 5.2e-68 262.3 401 43.6
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 5.2e-68 262.3 391 45.0
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 8.8e-68 261.5 368 46.5
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 2.6e-67 260.0 318 51.3
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 7.4e-67 258.5 304 51.0
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 2.8e-66 256.5 414 42.8
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 5.3e-65 252.3 439 41.0
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 2.6e-64 250.0 396 43.2
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 5.0e-63 245.7 417 40.3
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 4.0e-60 236.1 419 41.8
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 3.3e-59 233.0 347 45.0
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.3e-55 221.1 282 48.9
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 2.5e-54 216.9 354 41.8
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 2.7e-53 213.4 427 39.6
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 9.8e-51 204.9 359 39.8
BcaNung07163 Brassica carinata HOM05D004612 ORTHO05D004940 1.1e-49 201.4 315 43.5
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 3.1e-49 199.9 309 42.7
BcaNung05358 Brassica carinata HOM05D004612 ORTHO05D004940 1.6e-48 197.6 337 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1798 Anthoceros agrestis HOM05D004612 ORTHO05D004940 6.1e-45 185.7 352 38.1
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 4.4e-43 179.5 273 44.7
SMO364G0809 Selaginella moellendorffii HOM05D004612 ORTHO05D004940 1.1e-41 174.9 375 38.1
CARHR288840 Cardamine hirsuta HOM05D004612 ORTHO05D004940 2.4e-41 173.7 281 42.3
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 9.2e-41 171.8 271 41.7
VMungo1127G0842 Vigna mungo HOM05D004612 ORTHO05D004940 3.8e-39 166.4 213 50.2
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.3e-38 163.3 134 68.7
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 3.6e-37 159.8 262 41.2
Zm00001eb433970 Zea mays HOM05D004612 ORTHO05D004940 8.0e-37 158.7 297 38.7
Mapoly0068s0044 Marchantia polymorpha HOM05D004612 ORTHO05D004940 1.8e-36 157.5 311 35.7
CDE05G3327 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 5.7e-35 152.5 403 34.2
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 6.4e-34 149.1 187 48.7
Haze_05813 Corylus avellana HOM05D000402 ORTHO05D004940 1.1e-33 148.3 113 64.6
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 5.9e-32 142.5 162 54.9
vmacro13422 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.3e-31 140.6 262 39.7
Peaxi162Scf00246g01122 Petunia axillaris HOM05D004612 ORTHO05D004940 5.2e-28 129.4 164 49.4
Gohir.D02G148550 Gossypium hirsutum HOM05D004612 ORTHO05D004940 8.9e-28 128.6 158 51.3
PGSC0003DMG400021637 Solanum tuberosum HOM05D004612 ORTHO05D004940 1.2e-27 128.3 164 45.7
SEGI_36589 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 3.7e-26 123.2 110 60.0
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 4.9e-26 122.9 158 51.9
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.3e-23 114.8 198 39.4
vmacro13311 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.2e-21 108.2 176 44.3
Aqoxy5G04026 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 1.6e-21 107.8 204 37.7
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 8.9e-20 102.1 192 39.6
vmacro13310 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.4e-17 94.7 135 45.2
SEGI_15231 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 2.3e-15 87.4 79 62.0
Cc02_g28690 Coffea canephora HOM05D004612 ORTHO05D004940 3.9e-15 86.7 150 38.0
Gorai.005G189400 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.1e-14 85.1 158 41.1
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 1.1e-14 85.1 134 43.3
Gohir.D02G101800 Gossypium hirsutum HOM05D004612 ORTHO05D004940 5.6e-14 82.8 70 68.6
Cre11.g480750 Chlamydomonas reinhardtii HOM05D004612 ORTHO05D004940 9.5e-14 82.0 188 38.3
arahy.Tifrunner.gnm1.ann1.B6YWYF Arachis hypogaea HOM05D004612 ORTHO05D004940 3.6e-13 80.1 105 46.7
Gorai.007G277100 Gossypium raimondii HOM05D004612 ORTHO05D004940 4.7e-13 79.7 70 67.1
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.1e-13 79.0 87 56.3
Gohir.D11G259000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 2.3e-12 77.4 70 65.7
Gorai.005G115400 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.3e-12 77.4 70 65.7
Gohir.D02G169000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.4e-11 73.2 67 64.2
CBR_g30725 Chara braunii HOM05D004612 ORTHO05D004940 5.8e-11 72.8 115 35.7
SEGI_33425 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 5.8e-11 72.8 103 45.6
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 2.2e-10 70.9 84 48.8
CSS0007523 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D111461 4.9e-10 69.7 45 75.6
CSS0011716 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.4e-09 67.4 78 55.1
CSS0020995 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.1e-09 66.6 60 63.3
RcHm_v2.0_Chr1g0353681 Rosa chinensis HOM05D004612 ORTHO05D004940 4.1e-09 66.6 42 81.0
Actinidia20931 Actinidia chinensis HOM05D004612 ORTHO05D004940 1.2e-08 65.1 48 72.9
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 3.5e-08 63.5 92 42.4
MD01G1053500 Malus domestica HOM05D004612 ORTHO05D004940 3.5e-08 63.5 58 58.6
Lsat_1_v5_gn_5_81800 Lactuca sativa HOM05D004612 ORTHO05D004940 3.0e-07 60.5 54 59.3
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-06 57.8 36 77.8
Gohir.D12G186900 Gossypium hirsutum HOM05D002101 ORTHO05D002126 5.6e-06 56.2 285 24.9


User provided reference genes

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