Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.3e-49 199.5 104 100.0
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 9.0e-48 193.4 104 93.3
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.6e-47 191.8 104 92.3
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-44 182.6 104 86.5
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.9e-42 175.6 104 83.7
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.8e-25 117.9 104 61.5
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 2.4e-24 115.5 104 60.6
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 3.4e-23 111.7 104 58.7
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 3.4e-23 111.7 104 58.7
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.7e-22 109.4 104 59.6
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 7.2e-21 104.0 104 56.7
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 4.6e-20 101.3 97 55.7
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.1e-20 100.9 106 57.5
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 7.9e-20 100.5 95 60.0
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 8.7e-19 97.1 104 55.8
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.1e-18 96.7 104 50.0
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.9e-18 95.9 101 52.5
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-18 95.5 104 50.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-18 95.5 104 49.0
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.7e-18 94.4 98 50.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-16 89.7 104 48.1
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 4.1e-16 88.2 101 47.5
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 5.3e-16 87.8 98 48.0
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 6.9e-16 87.4 98 48.0
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 6.9e-16 87.4 104 42.3
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.2e-15 86.7 106 46.2
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.5e-15 86.3 101 46.5
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.4e-15 85.1 101 44.6
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 4.5e-15 84.7 97 49.5
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 5.9e-15 84.3 102 47.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.0e-14 83.6 104 45.2
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.3e-14 83.2 101 46.5
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.7e-14 82.8 104 47.1
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 2.2e-14 82.4 92 46.7
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 3.8e-14 81.6 99 43.4
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 3.8e-14 81.6 101 42.6
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 6.5e-14 80.9 101 44.6
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.9e-13 79.3 102 49.0
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.2e-13 78.6 101 45.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 5.5e-13 77.8 104 48.1
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 9.4e-13 77.0 105 43.8
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.1e-12 75.9 98 44.9
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.7e-12 75.5 104 43.3
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 6.1e-12 74.3 103 45.6
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 7.9e-12 73.9 100 47.0
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.8e-11 72.8 101 42.6
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.3e-11 72.4 98 42.9
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 5.1e-11 71.2 102 45.1
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 5.1e-11 71.2 92 42.4
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 5.1e-11 71.2 92 46.7
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 8.8e-11 70.5 95 45.3
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 8.8e-11 70.5 102 40.2
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 1.5e-10 69.7 101 39.6
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.0e-10 69.3 101 43.6
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 2.5e-10 68.9 101 39.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 5.7e-10 67.8 101 41.6
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 5.7e-10 67.8 104 38.5
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 7.4e-10 67.4 101 42.6
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 7.4e-10 67.4 101 42.6
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.4e-10 67.4 106 42.5
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 7.4e-10 67.4 101 40.6
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 7.4e-10 67.4 102 40.2
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 7.4e-10 67.4 101 38.6
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 7.4e-10 67.4 101 38.6
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 9.7e-10 67.0 102 45.1
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 9.7e-10 67.0 101 43.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.3e-09 66.6 101 42.6
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.8e-09 65.5 101 35.6
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 4.8e-09 64.7 101 36.6
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 6.3e-09 64.3 92 42.4
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 8.2e-09 63.9 104 40.4
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 8.2e-09 63.9 102 43.1
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 8.2e-09 63.9 101 42.6
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.4e-08 63.2 103 44.7
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.4e-08 63.2 101 43.6
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.4e-08 62.4 102 43.1
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 3.1e-08 62.0 101 34.7
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.9e-08 60.8 102 46.1
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 9.1e-08 60.5 100 38.0
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.2e-07 60.1 82 41.5
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.5e-07 59.7 104 38.5
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.5e-07 59.7 98 37.8
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 2.6e-07 58.9 101 36.6
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 7.7e-07 57.4 101 42.6
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 1.0e-06 57.0 96 36.5
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.7e-06 56.2 101 40.6
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 1.7e-06 56.2 98 36.7
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.2e-06 55.8 95 38.9
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 2.2e-06 55.8 101 36.6
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 2.9e-06 55.5 101 32.7
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.9e-06 55.5 94 39.4
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.8e-06 55.1 101 41.6
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.8e-06 55.1 104 36.5
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 5.0e-06 54.7 100 36.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 5.0e-06 54.7 101 38.6
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 5.0e-06 54.7 101 38.6
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 6.5e-06 54.3 97 35.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 8.5e-06 53.9 105 37.1


User provided reference genes

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